Variant report

Variant	rs6794699
Chromosome Location	chr3:137961068-137961069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:137904709..137907522-chr3:137959298..137962598,4	MCF-7	breast:
2	chr3:137892325..137894479-chr3:137958302..137961084,2	K562	blood:
3	chr3:137955771..137958051-chr3:137958770..137963541,5	MCF-7	breast:
4	chr3:137955050..137957991-chr3:137959988..137961824,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138231	Chromatin interaction
ENSG00000114098	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6788103	1.00[YRI][hapmap]
rs6795079	1.00[ASW][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877536	chr3:137870523-137970907	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137919200-137964800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:137940200-137970600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:137940400-137969200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:137940400-137970600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:137940600-137971200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:137941000-137968200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:137941000-137968600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:137941600-137962400	Strong transcription	Liver	Liver
9	chr3:137941600-137967200	Strong transcription	Dnd41	blood
10	chr3:137941600-137968000	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr3:137941800-137966800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:137942000-137962000	Strong transcription	Primary B cells from cord blood	blood
13	chr3:137942000-137968000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:137942200-137966400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:137942200-137967800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:137942400-137970600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:137942600-137965800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:137942600-137968600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr3:137942600-137970600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr3:137942800-137993400	Weak transcription	Fetal Brain Male	brain
21	chr3:137943600-137992000	Weak transcription	Gastric	stomach
22	chr3:137944200-137992000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:137944600-137971400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:137944800-137967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:137944800-137984400	Weak transcription	Spleen	Spleen
26	chr3:137944800-138017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:137945000-137976200	Weak transcription	Psoas Muscle	Psoas
28	chr3:137945200-137962400	Weak transcription	Brain Germinal Matrix	brain
29	chr3:137945200-137964000	Weak transcription	HSMMtube	muscle
30	chr3:137946200-137991800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:137946600-137964000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:137946600-137969000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:137947400-137967600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:137947400-137968800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:137947600-137968400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr3:137949200-137964000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr3:137950000-137972400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:137950200-137965000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:137950800-137992000	Weak transcription	NHLF	lung
40	chr3:137951000-137965000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr3:137951000-137977600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:137951200-137964000	Weak transcription	Right Ventricle	heart
43	chr3:137951200-137992000	Weak transcription	Pancreas	Pancrea
44	chr3:137951400-137965600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:137951400-137965800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:137951800-137963200	Weak transcription	Fetal Intestine Small	intestine
47	chr3:137952000-137966800	Weak transcription	Fetal Heart	heart
48	chr3:137952200-137964000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr3:137952200-137984400	Weak transcription	Aorta	Aorta
50	chr3:137952200-137992000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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