Variant report

Variant	rs67985903
Chromosome Location	chr7:48518199-48518200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 216 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:205)

rs_ID	r²[population]
rs10254742	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10256975	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10271606	0.90[EUR][1000 genomes]
rs10499682	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10499683	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10499684	0.83[EUR][1000 genomes]
rs1109443	0.90[EUR][1000 genomes]
rs11185608	0.83[EUR][1000 genomes]
rs11185609	0.83[EUR][1000 genomes]
rs12112361	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12113920	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12667982	0.83[ASN][1000 genomes]
rs12669930	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12669976	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12670340	0.83[EUR][1000 genomes]
rs12671073	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12672551	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12674031	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12674401	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12674424	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1316349	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1316821	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1317162	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13237819	0.83[ASN][1000 genomes]
rs1405920	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1433506	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1527835	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1527839	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1527840	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1609212	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1609213	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1609214	0.83[EUR][1000 genomes]
rs17092931	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132335	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17132373	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132376	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132383	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132388	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17132402	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132417	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132425	0.83[ASN][1000 genomes]
rs17132430	0.83[ASN][1000 genomes]
rs17132439	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132443	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132460	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132479	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17132491	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1865194	0.90[EUR][1000 genomes]
rs1918580	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918581	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918586	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918587	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918588	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918589	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918594	0.81[EUR][1000 genomes]
rs1918595	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918596	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918597	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918598	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1918601	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1918602	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1918606	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918608	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918613	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2141251	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2178086	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2178087	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2217710	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2222731	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2362307	0.88[EUR][1000 genomes]
rs28481588	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2885484	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34252471	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4072501	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4072502	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4072503	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41332948	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4144063	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4144064	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4144067	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4295610	0.83[EUR][1000 genomes]
rs4296993	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4587280	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55650796	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55735040	0.81[EUR][1000 genomes]
rs55903755	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55974693	0.81[EUR][1000 genomes]
rs56205257	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56213942	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56232183	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56241442	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56247566	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56393952	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56408667	0.81[EUR][1000 genomes]
rs56798342	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56806901	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57226042	0.81[EUR][1000 genomes]
rs57370511	0.81[EUR][1000 genomes]
rs57401097	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57877708	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58054917	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58077564	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58321909	0.85[EUR][1000 genomes]
rs58433353	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58481134	0.81[EUR][1000 genomes]
rs58486673	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58553345	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58635193	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59100514	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59227959	0.83[ASN][1000 genomes]
rs59243715	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59549039	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59673264	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60147095	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60184691	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60918397	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61171557	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61310674	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61562434	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61602397	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61649354	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61706229	0.81[EUR][1000 genomes]
rs6583452	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66501875	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66522605	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66591834	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66729625	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66763020	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66785002	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66793444	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66898358	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66909576	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67001204	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67040412	0.85[EUR][1000 genomes]
rs67074321	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67081192	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67132562	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67163301	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67187623	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67208890	0.84[AMR][1000 genomes]
rs67223065	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67249167	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67249859	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67294077	0.81[EUR][1000 genomes]
rs67298249	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67316911	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67331245	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67370671	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67398358	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67744396	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67744565	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67748204	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67764854	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67845756	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67852079	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67875048	0.81[EUR][1000 genomes]
rs68007434	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68029531	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68084496	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68110103	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68168969	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68179951	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6944801	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6954223	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6955102	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6957309	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6963717	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6966994	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6968069	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6970434	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6972202	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6972440	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6973231	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6977997	0.85[EUR][1000 genomes]
rs6980042	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6980069	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73094625	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73107574	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73109344	0.83[EUR][1000 genomes]
rs73109355	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73109362	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73109364	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73109382	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73109385	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73109399	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73109401	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73111405	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7357308	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7455877	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7457791	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7776966	0.83[ASN][1000 genomes]
rs7778895	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7781149	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7781150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7785069	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7791044	0.83[ASN][1000 genomes]
rs7792728	0.83[ASN][1000 genomes]
rs7797852	0.83[ASN][1000 genomes]
rs7804139	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7806480	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7807529	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7810275	0.82[AMR][1000 genomes]
rs9690617	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9691143	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9691391	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1032221	chr7:48302789-48546684	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1015399	chr7:48321542-48544359	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2761325	chr7:48409639-48557382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv888007	chr7:48467581-48533508	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48505200-48520000	Weak transcription	Pancreas	Pancrea
2	chr7:48511600-48554400	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:48514800-48523000	Weak transcription	Primary hematopoietic stem cells	blood

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