Variant report

Variant	rs6798637
Chromosome Location	chr3:151106371-151106372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151105298..151107516-chr3:151116586..151118141,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10935840	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10935841	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10935842	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10935843	0.89[EUR][1000 genomes]
rs11707416	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11708287	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11708767	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11709550	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11713504	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11717169	0.88[EUR][1000 genomes]
rs11923424	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12485508	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12488803	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12489121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12490051	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490184	0.88[EUR][1000 genomes]
rs12492266	0.88[EUR][1000 genomes]
rs12493628	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12497065	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12497089	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12498042	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17204501	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17204508	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17204515	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17204536	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17283010	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17283038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17283052	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17283059	0.85[EUR][1000 genomes]
rs2276765	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs3732765	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs3821663	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4679817	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4680400	0.89[EUR][1000 genomes]
rs4680405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680406	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4680408	0.88[EUR][1000 genomes]
rs57335550	0.86[EUR][1000 genomes]
rs57781984	0.86[EUR][1000 genomes]
rs59605118	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60105866	0.86[EUR][1000 genomes]
rs67886110	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6803771	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs73159907	0.88[EUR][1000 genomes]
rs73159908	0.88[EUR][1000 genomes]
rs73159915	0.88[EUR][1000 genomes]
rs73159920	0.88[EUR][1000 genomes]
rs7612010	0.85[ASN][1000 genomes]
rs765281	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6798637	P2RY12	cis	Adipose Subcutaneous	GTEx
rs6798637	P2RY12	cis	lung	GTEx

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:151065600-151109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:151065600-151115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:151069400-151129800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:151075600-151136400	Weak transcription	Fetal Brain Female	brain
6	chr3:151083000-151110400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:151084400-151109200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:151087600-151116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:151090200-151142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:151095400-151111000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:151096000-151129000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:151096600-151112400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:151097800-151107800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:151097800-151108800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:151098800-151143400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:151099400-151107600	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:151099400-151109000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:151099600-151107600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:151099800-151107800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr3:151102000-151108000	Weak transcription	Placenta	Placenta
21	chr3:151102000-151110400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:151102200-151148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:151102600-151110400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:151102600-151113600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:151102600-151132000	Weak transcription	Brain Angular Gyrus	brain
26	chr3:151102800-151106600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:151102800-151107800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:151102800-151108400	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:151102800-151110800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:151102800-151113400	Weak transcription	NHLF	lung
31	chr3:151102800-151136400	Weak transcription	Brain Substantia Nigra	brain
32	chr3:151102800-151150600	Weak transcription	Brain Anterior Caudate	brain
33	chr3:151103000-151111200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:151103600-151107400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:151104000-151112400	Weak transcription	NHDF-Ad	bronchial
36	chr3:151104200-151139600	Weak transcription	Dnd41	blood
37	chr3:151104400-151113400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:151105000-151107200	Enhancers	Primary B cells from cord blood	blood
39	chr3:151105200-151106400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:151105400-151106400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:151106000-151106800	Weak transcription	Fetal Thymus	thymus
42	chr3:151106000-151109200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:151106000-151110400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:151106000-151130800	Weak transcription	Fetal Intestine Small	intestine
45	chr3:151106000-151134200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:151106000-151154600	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:151106200-151107600	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr3:151106200-151122000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:151106200-151128000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:151106200-151131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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