Variant report

Variant	rs6799369
Chromosome Location	chr3:162665779-162665780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs34604755	0.90[AFR][1000 genomes]
rs59930817	1.00[AMR][1000 genomes]
rs60820929	1.00[AMR][1000 genomes]
rs61133368	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6772450	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6772457	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6774881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780908	0.96[AFR][1000 genomes]
rs6786224	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6786322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6805653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011788	1.00[AMR][1000 genomes]
rs73012818	1.00[AMR][1000 genomes]
rs73015772	1.00[AMR][1000 genomes]
rs73016445	1.00[AMR][1000 genomes]
rs73016993	1.00[AMR][1000 genomes]
rs73019598	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021311	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021327	1.00[AMR][1000 genomes]
rs73021381	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021382	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021391	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021396	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73022451	1.00[AMR][1000 genomes]
rs73022458	1.00[AMR][1000 genomes]
rs73022476	1.00[AMR][1000 genomes]
rs73023104	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023118	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023119	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023127	1.00[AMR][1000 genomes]
rs73023130	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023132	1.00[AMR][1000 genomes]
rs73023137	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023146	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023151	1.00[AMR][1000 genomes]
rs73023157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023175	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023178	1.00[AMR][1000 genomes]
rs73023181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025189	1.00[AMR][1000 genomes]
rs73025191	1.00[AMR][1000 genomes]
rs73025196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025198	1.00[AMR][1000 genomes]
rs73027114	1.00[AMR][1000 genomes]
rs7612226	1.00[AMR][1000 genomes]
rs7616970	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7630457	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7630644	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634722	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7653833	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv470994	chr3:162217993-162945834	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv869804	chr3:162414099-162776884	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757902	chr3:162471049-162742794	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2759197	chr3:162471049-162742794	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv869992	chr3:162483397-162776884	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv870318	chr3:162494699-162819441	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv592214	chr3:162504321-162721962	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv870056	chr3:162504822-162689567	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv592249	chr3:162512683-162721962	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv592250	chr3:162512683-162768964	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1813805	chr3:162513755-162721962	Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv829777	chr3:162515887-162677704	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv1000473	chr3:162545704-162673567	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv536784	chr3:162545705-162677693	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv1000858	chr3:162545705-162894644	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv829778	chr3:162565661-162732355	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv877775	chr3:162595758-162735677	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv877776	chr3:162618885-162671443	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv877777	chr3:162618885-162727247	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv877778	chr3:162618885-162754958	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv877779	chr3:162618885-162932624	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv877780	chr3:162618885-162935109	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
25	nsv1006015	chr3:162626560-163159978	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	nsv1008026	chr3:162628602-162726677	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	esv33448	chr3:162652132-162697412	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv877781	chr3:162664345-162754958	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv877782	chr3:162664345-162918387	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162665200-162665800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr3:162665400-162666000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr3:162665600-162665800	ZNF genes & repeats	Aorta	Aorta

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