Variant report

Variant	rs67994077
Chromosome Location	chr12:63318906-63318907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63307556..63310416-chr12:63316957..63319836,2	MCF-7	breast:
2	chr12:63311089..63313901-chr12:63317542..63319982,2	K562	blood:
3	chr12:63311594..63314180-chr12:63316529..63319500,2	MCF-7	breast:
4	chr12:63314546..63316947-chr12:63317010..63319516,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1026096	1.00[ASN][1000 genomes]
rs10506470	1.00[ASN][1000 genomes]
rs1249935	1.00[ASN][1000 genomes]
rs12813083	1.00[ASN][1000 genomes]
rs12821413	1.00[ASN][1000 genomes]
rs12821849	1.00[ASN][1000 genomes]
rs12829134	1.00[ASN][1000 genomes]
rs17098568	1.00[ASN][1000 genomes]
rs17098575	1.00[ASN][1000 genomes]
rs17098581	1.00[ASN][1000 genomes]
rs17098689	1.00[ASN][1000 genomes]
rs17098761	1.00[ASN][1000 genomes]
rs17098763	1.00[ASN][1000 genomes]
rs17098774	1.00[ASN][1000 genomes]
rs17098779	1.00[ASN][1000 genomes]
rs17098789	1.00[ASN][1000 genomes]
rs17098794	1.00[ASN][1000 genomes]
rs1731661	1.00[ASN][1000 genomes]
rs17739095	1.00[ASN][1000 genomes]
rs2464118	1.00[ASN][1000 genomes]
rs2840070	1.00[ASN][1000 genomes]
rs2884542	1.00[ASN][1000 genomes]
rs34203667	1.00[ASN][1000 genomes]
rs35910451	1.00[ASN][1000 genomes]
rs67784802	1.00[ASN][1000 genomes]
rs699591	1.00[ASN][1000 genomes]
rs699593	1.00[ASN][1000 genomes]
rs699615	1.00[ASN][1000 genomes]
rs71450600	1.00[ASN][1000 genomes]
rs71465172	1.00[ASN][1000 genomes]
rs71465180	1.00[ASN][1000 genomes]
rs71465181	1.00[ASN][1000 genomes]
rs771974	1.00[ASN][1000 genomes]
rs771976	1.00[ASN][1000 genomes]
rs772538	1.00[ASN][1000 genomes]
rs772541	1.00[ASN][1000 genomes]
rs9971730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv899162	chr12:63279750-63334242	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv899163	chr12:63288343-63325988	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63309600-63323400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr12:63312000-63325000	Weak transcription	K562	blood
3	chr12:63313400-63322000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:63313600-63326800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:63313800-63327000	Weak transcription	Left Ventricle	heart
6	chr12:63314000-63324800	Weak transcription	Hela-S3	cervix
7	chr12:63314000-63326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:63314000-63327000	Weak transcription	Gastric	stomach
9	chr12:63314200-63322200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:63314200-63327000	Weak transcription	Aorta	Aorta
11	chr12:63316600-63322000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:63316800-63319400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr12:63316800-63321800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr12:63316800-63322200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:63316800-63324400	Weak transcription	Osteobl	bone
16	chr12:63317000-63319400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr12:63317000-63321800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr12:63317000-63322000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr12:63317000-63322000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr12:63317000-63322200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:63317000-63322400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr12:63317000-63324600	Weak transcription	Fetal Intestine Small	intestine
23	chr12:63317000-63325200	Weak transcription	Fetal Intestine Large	intestine
24	chr12:63317600-63323200	Weak transcription	Brain Angular Gyrus	brain
25	chr12:63317600-63324400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr12:63318200-63322200	Weak transcription	Brain Anterior Caudate	brain
27	chr12:63318400-63319000	Weak transcription	HepG2	liver
28	chr12:63318400-63319200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:63318400-63319600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr12:63318400-63323600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr12:63318600-63319000	Weak transcription	Brain Substantia Nigra	brain
32	chr12:63318600-63319400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:63318600-63319600	Weak transcription	Brain Hippocampus Middle	brain
34	chr12:63318800-63322200	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links