Variant report

Variant	rs6800163
Chromosome Location	chr3:46589506-46589507
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46582368..46586773-chr3:46586902..46591684,9	K562	blood:
2	chr3:46582873..46586773-chr3:46587066..46590997,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12486039	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2176861	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924380	0.93[ASN][1000 genomes]
rs35303057	0.86[EUR][1000 genomes]
rs4682820	0.93[ASN][1000 genomes]
rs62247799	0.93[ASN][1000 genomes]
rs6772937	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808142	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9311391	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810340	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876737	chr3:46569721-46595431	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
2	chr3:46556400-46591000	Weak transcription	Psoas Muscle	Psoas
3	chr3:46558400-46591000	Weak transcription	Gastric	stomach
4	chr3:46578400-46599200	Weak transcription	HSMMtube	muscle
5	chr3:46581200-46599200	Weak transcription	Fetal Heart	heart
6	chr3:46581400-46594400	Enhancers	Fetal Thymus	thymus
7	chr3:46581600-46591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:46581600-46599400	Weak transcription	Spleen	Spleen
9	chr3:46583200-46590600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:46584400-46598000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:46584600-46591000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:46584600-46591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:46584800-46590400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:46584800-46590800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:46584800-46592600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:46584800-46594000	Weak transcription	NHDF-Ad	bronchial
17	chr3:46584800-46594400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:46585800-46589600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr3:46586600-46590000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:46586800-46590800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:46586800-46594800	Weak transcription	Liver	Liver
22	chr3:46587000-46590000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:46587000-46590400	Enhancers	K562	blood
24	chr3:46587200-46598800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:46587600-46591000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:46587800-46590800	Weak transcription	Right Ventricle	heart
27	chr3:46587800-46597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:46587800-46599600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr3:46588000-46590000	Enhancers	Dnd41	blood
30	chr3:46588000-46591000	Weak transcription	Ovary	ovary
31	chr3:46588400-46599600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:46588600-46591000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr3:46588600-46591000	Weak transcription	Primary T cells from cord blood	blood
34	chr3:46588600-46591200	Weak transcription	GM12878-XiMat	blood
35	chr3:46588600-46592600	Weak transcription	Esophagus	oesophagus
36	chr3:46588800-46589800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:46588800-46590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr3:46588800-46590000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:46588800-46590200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:46588800-46591000	Weak transcription	Left Ventricle	heart
41	chr3:46589000-46590000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr3:46589000-46590200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:46589000-46590400	Weak transcription	Thymus	Thymus
44	chr3:46589000-46591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr3:46589400-46589600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr3:46589400-46589800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:46589400-46590800	Weak transcription	Osteobl	bone
48	chr3:46589400-46591200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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