Variant report

Variant	rs68011593
Chromosome Location	chr4:147775092-147775093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519821	0.84[AMR][1000 genomes]
rs12500369	0.84[AMR][1000 genomes]
rs12501579	0.86[AMR][1000 genomes]
rs17022031	0.84[AMR][1000 genomes]
rs17609942	0.84[AMR][1000 genomes]
rs17609956	0.86[AMR][1000 genomes]
rs17656106	0.86[AMR][1000 genomes]
rs35788629	0.82[AMR][1000 genomes]
rs4835060	0.81[ASN][1000 genomes]
rs4835350	0.82[AMR][1000 genomes]
rs4835351	0.84[AMR][1000 genomes]
rs6814899	0.82[AMR][1000 genomes]
rs6855967	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72960363	0.82[AMR][1000 genomes]
rs868578	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880239	chr4:147666797-147779999	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147766400-147779400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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