Variant report

Variant	rs68032922
Chromosome Location	chr8:125983906-125983907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125485603..125487228-chr8:125983400..125985539,2	K562	blood:
2	chr8:125981986..125989189-chr8:126007056..126015447,32	MCF-7	breast:
3	chr8:125951265..125953100-chr8:125983805..125986382,2	MCF-7	breast:
4	chr8:125982086..125986890-chr8:126008872..126013713,7	MCF-7	breast:
5	chr8:125541023..125542526-chr8:125981975..125984707,2	MCF-7	breast:
6	chr8:125928423..125931250-chr8:125983352..125985484,3	MCF-7	breast:
7	chr8:125874240..125876735-chr8:125982573..125984700,2	MCF-7	breast:
8	chr8:125550160..125552842-chr8:125982505..125985258,3	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000249816	Chromatin interaction
ENSG00000104549	Chromatin interaction
ENSG00000170881	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000253513	Chromatin interaction
ENSG00000245149	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12546767	0.83[AMR][1000 genomes]
rs12550611	0.83[AMR][1000 genomes]
rs12682497	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13250545	0.81[AMR][1000 genomes]
rs13268726	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13272317	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1427084	0.83[AMR][1000 genomes]
rs16900167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2382997	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590671	0.89[AMR][1000 genomes]
rs2590673	0.88[AMR][1000 genomes]
rs2590675	0.88[AMR][1000 genomes]
rs34132029	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35197498	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125969800-125985000	Weak transcription	Right Atrium	heart
2	chr8:125977400-125985400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:125977600-125985200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:125977600-125985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:125979600-125985200	Weak transcription	Fetal Heart	heart
6	chr8:125979800-125985400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:125982000-125984800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr8:125982600-125985200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:125982800-125984800	Weak transcription	HepG2	liver
10	chr8:125982800-125985000	Weak transcription	Placenta	Placenta
11	chr8:125983000-125985200	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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