Variant report

Variant	rs6804574
Chromosome Location	chr3:105150752-105150753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105149949..105152027-chr3:105152543..105154194,2	K562	blood:
2	chr3:105148829..105151449-chr3:105151857..105154194,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1038522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1044240	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11714319	0.93[ASN][1000 genomes]
rs2049217	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3772557	0.87[ASN][1000 genomes]
rs57834585	0.81[AFR][1000 genomes]
rs62260776	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62260827	0.87[ASN][1000 genomes]
rs62262154	0.80[AFR][1000 genomes]
rs62262969	0.87[ASN][1000 genomes]
rs62263560	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62263605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62263606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62263608	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437589	0.81[AFR][1000 genomes]
rs6437601	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6764212	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6765258	0.87[ASN][1000 genomes]
rs6778460	0.93[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73175483	0.87[ASN][1000 genomes]
rs73175493	0.87[ASN][1000 genomes]
rs73189010	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288802	1.00[JPT][hapmap]
rs9842028	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877304	chr3:105122214-105198374	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105135200-105152000	Weak transcription	NH-A	brain
2	chr3:105137400-105178600	Weak transcription	Primary B cells from cord blood	blood
3	chr3:105144400-105185000	Weak transcription	Aorta	Aorta
4	chr3:105146400-105159200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:105146400-105162600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:105148400-105152200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:105148400-105162600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:105148600-105162200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:105149200-105150800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:105149400-105150800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:105149400-105150800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr3:105149400-105155400	Weak transcription	Liver	Liver
13	chr3:105149800-105150800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:105150200-105150800	Enhancers	Brain Cingulate Gyrus	brain
15	chr3:105150400-105151600	Weak transcription	Brain Anterior Caudate	brain
16	chr3:105150400-105155600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:105150400-105163400	Weak transcription	A549	lung
18	chr3:105150600-105151400	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:105150600-105151600	Weak transcription	Brain Substantia Nigra	brain
20	chr3:105150600-105152000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:105150600-105159200	Weak transcription	Brain Angular Gyrus	brain

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