Variant report

Variant	rs68053069
Chromosome Location	chr9:100725744-100725745
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100717154..100719569-chr9:100723550..100725894,3	K562	blood:
2	chr9:100701173..100704180-chr9:100725038..100729962,4	K562	blood:
3	chr9:100681341..100688036-chr9:100719041..100726043,8	K562	blood:
4	chr9:100713086..100729092-chr9:100738274..100752806,69	K562	blood:
5	chr9:100704233..100707185-chr9:100722015..100725827,3	K562	blood:

Variant related genes	Relation type
ENSG00000136929	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000236896	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10984297	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10984349	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10984375	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10984462	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10984478	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984484	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984499	0.91[ASN][1000 genomes]
rs10984588	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10984599	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984601	0.85[AMR][1000 genomes]
rs1127703	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12235434	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12236440	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12237296	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12377604	0.85[ASN][1000 genomes]
rs1475695	0.81[ASN][1000 genomes]
rs1475696	0.84[ASN][1000 genomes]
rs17431934	0.85[ASN][1000 genomes]
rs3780416	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3780417	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3780418	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3780419	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4498663	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4618817	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67975003	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7024281	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7025609	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72753548	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72753572	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72753587	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755109	0.85[ASN][1000 genomes]
rs7864655	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100721800-100726200	Weak transcription	HSMMtube	muscle
2	chr9:100722400-100727400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:100722600-100730800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:100723800-100725800	Enhancers	Brain Germinal Matrix	brain
5	chr9:100725200-100729600	Enhancers	K562	blood

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