The 2.0 version of rSNPBase

Variant report

Variant rs6805377
Chromosome Location chr3:145967720-145967721
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:145948000-145967800 Weak transcription Placenta Amnion Placenta Amnion
2 chr3:145953200-145968000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr3:145954600-145967800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr3:145960200-145967800 Weak transcription Muscle Satellite Cultured Cells --
5 chr3:145960400-145967800 Weak transcription Fetal Intestine Large intestine
6 chr3:145960800-145967800 Weak transcription Primary hematopoietic stem cells blood
7 chr3:145960800-145967800 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr3:145963000-145967800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr3:145964000-145968200 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr3:145965400-145969800 Active TSS Right Atrium heart
11 chr3:145965600-145967800 Enhancers Hela-S3 cervix
12 chr3:145965600-145968200 Weak transcription Lung lung
13 chr3:145965600-145969200 Active TSS Aorta Aorta
14 chr3:145965800-145967800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr3:145965800-145968200 Weak transcription Pancreas Pancrea
16 chr3:145965800-145969600 Active TSS NHLF lung
17 chr3:145966200-145967800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr3:145966200-145969600 Active TSS Stomach Smooth Muscle stomach
19 chr3:145966200-145969800 Active TSS Colon Smooth Muscle Colon
20 chr3:145966400-145967800 Active TSS HUES6 Cell Line embryonic stem cell
21 chr3:145966400-145967800 Enhancers A549 lung
22 chr3:145966400-145969400 Active TSS Fetal Stomach stomach
23 chr3:145966400-145969800 Active TSS Ovary ovary
24 chr3:145966400-145969800 Active TSS Rectal Mucosa Donor 29 rectum
25 chr3:145966600-145967800 Active TSS Adipose Nuclei Adipose
26 chr3:145966600-145969200 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr3:145966600-145969600 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr3:145966800-145969000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
29 chr3:145966800-145969400 Active TSS Pancreatic Islets Pancreatic Islet
30 chr3:145966800-145969600 Active TSS Duodenum Smooth Muscle Duodenum
31 chr3:145967000-145967800 Enhancers Cortex derived primary cultured neurospheres brain
32 chr3:145967000-145967800 Enhancers Fetal Intestine Small intestine
33 chr3:145967200-145967800 Active TSS Fetal Lung lung
34 chr3:145967200-145969000 Active TSS Brain Angular Gyrus brain
35 chr3:145967200-145969400 Active TSS HUVEC blood vessel
36 chr3:145967200-145969800 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr3:145967200-145969800 Active TSS Osteobl bone
38 chr3:145967400-145967800 Active TSS Rectal Mucosa Donor 31 rectum
39 chr3:145967600-145967800 Active TSS Breast Myoepithelial Primary Cells Breast
40 chr3:145967600-145967800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr3:145967600-145967800 Enhancers Rectal Smooth Muscle rectum
42 chr3:145967600-145968000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr3:145967600-145968000 Flanking Active TSS Liver Liver
44 chr3:145967600-145968000 Flanking Active TSS NHDF-Ad bronchial
45 chr3:145967600-145968400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015