Variant report

Variant	rs6805936
Chromosome Location	chr3:54551759-54551760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11713134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13322345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56162158	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56202159	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60912862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6445674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6445697	1.00[CEU][hapmap]
rs6783107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6804632	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6807093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6807107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6808154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs73841604	0.83[EUR][1000 genomes]
rs7639299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54543800-54553600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:54550200-54553000	Weak transcription	Ovary	ovary
3	chr3:54551400-54552000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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