Variant report

Variant	rs68068983
Chromosome Location	chr11:71907482-71907483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10501409	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11235467	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34468529	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34897504	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35805771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60823467	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66484462	0.86[AMR][1000 genomes]
rs71477716	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71903400-71908400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:71903600-71909800	Weak transcription	Lung	lung
3	chr11:71906200-71912200	Enhancers	Placenta	Placenta
4	chr11:71906600-71907600	Enhancers	Fetal Stomach	stomach
5	chr11:71907200-71909600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:71907400-71909800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:71907400-71909800	Weak transcription	Hela-S3	cervix
8	chr11:71907400-71911200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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