Variant report

Variant	rs680699
Chromosome Location	chr11:59971977-59971978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1426252	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2081546	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2243987	0.97[ASN][1000 genomes]
rs2433240	0.97[ASN][1000 genomes]
rs524995	0.84[ASN][1000 genomes]
rs581818	0.97[ASN][1000 genomes]
rs582407	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs585540	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs587634	0.97[ASN][1000 genomes]
rs588448	0.80[ASN][1000 genomes]
rs590351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590532	0.95[ASN][1000 genomes]
rs592496	0.97[ASN][1000 genomes]
rs594414	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs595014	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs596788	0.97[ASN][1000 genomes]
rs597982	0.84[ASN][1000 genomes]
rs598862	0.97[ASN][1000 genomes]
rs600194	0.84[ASN][1000 genomes]
rs605820	0.95[ASN][1000 genomes]
rs607639	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs613548	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs613629	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs615405	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs620368	0.84[ASN][1000 genomes]
rs624233	0.97[ASN][1000 genomes]
rs625025	0.97[ASN][1000 genomes]
rs636988	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs638872	0.97[ASN][1000 genomes]
rs641051	0.97[ASN][1000 genomes]
rs641829	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs642426	0.97[ASN][1000 genomes]
rs646924	0.97[ASN][1000 genomes]
rs649234	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs650777	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs650853	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs650926	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs653285	0.97[ASN][1000 genomes]
rs654443	0.97[ASN][1000 genomes]
rs661376	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs662674	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs668095	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs668134	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs670925	0.97[ASN][1000 genomes]
rs672218	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs674971	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs675316	0.96[ASN][1000 genomes]
rs675452	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs682025	0.84[ASN][1000 genomes]
rs682739	0.97[ASN][1000 genomes]
rs684977	0.97[ASN][1000 genomes]
rs73485360	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59969400-59972000	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr11:59971800-59972000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:59971800-59973600	Genic enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:59971800-59974800	Enhancers	HUVEC	blood vessel

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