Variant report

Variant	rs68070005
Chromosome Location	chr3:67849438-67849439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1870541	1.00[ASN][1000 genomes]
rs56062840	1.00[ASN][1000 genomes]
rs6548776	1.00[ASN][1000 genomes]
rs66616930	1.00[ASN][1000 genomes]
rs72930838	1.00[ASN][1000 genomes]
rs73093343	1.00[ASN][1000 genomes]
rs73093357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309877	1.00[ASN][1000 genomes]
rs9812892	1.00[ASN][1000 genomes]
rs9820714	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823937	1.00[ASN][1000 genomes]
rs9857965	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67848000-67852200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:67848800-67849600	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links