Variant report

Variant	rs68079620
Chromosome Location	chr4:122282161-122282162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12651331	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55903137	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59286668	0.82[ASN][1000 genomes]
rs72668969	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72668974	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv4494	chr4:122256838-122290461	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1009199	chr4:122273631-122284157	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv1014399	chr4:122273631-122285135	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv1003747	chr4:122273631-122291131	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
10	nsv1014710	chr4:122273631-122292143	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1002113	chr4:122274144-122284157	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv1005642	chr4:122274144-122285135	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv1001804	chr4:122274642-122285135	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv437422	chr4:122276876-122291522	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv508308	chr4:122278897-122312719	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv595335	chr4:122280041-122288370	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3467682	chr4:122281202-122285800	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3467683	chr4:122281202-122285800	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	nsv10559	chr4:122281398-122292297	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3511588	chr4:122281552-122290950	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
21	esv2533163	chr4:122281681-122288646	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv2539204	chr4:122281761-122290800	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
23	esv2760845	chr4:122281973-122285315	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv2763814	chr4:122281973-122285315	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv1003477	chr4:122281973-122297539	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv822714	chr4:122282044-122289274	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	esv2385732	chr4:122282057-122290169	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	esv3467366	chr4:122282112-122290058	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	esv3467367	chr4:122282146-122290011	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
30	esv3467364	chr4:122282154-122290037	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122281000-122282200	Enhancers	HMEC	breast
2	chr4:122281200-122282200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:122281200-122282200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:122281200-122283400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:122281400-122282200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:122281400-122282200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:122281600-122282200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:122281600-122282200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:122281600-122282200	Enhancers	NHEK	skin

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