Variant report

Variant	rs6808467
Chromosome Location	chr3:60309307-60309308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510838	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11711608	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11716358	0.86[CEU][hapmap]
rs11717976	0.85[EUR][1000 genomes]
rs11720480	0.86[CEU][hapmap];0.95[EUR][1000 genomes]
rs17599894	0.84[CEU][hapmap]
rs17658293	0.83[EUR][1000 genomes]
rs60132759	0.84[EUR][1000 genomes]
rs67113918	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6779494	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs6800393	0.80[CEU][hapmap]
rs73103055	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103073	0.95[EUR][1000 genomes]
rs73103076	0.95[EUR][1000 genomes]
rs73103085	0.94[EUR][1000 genomes]
rs73103091	0.84[EUR][1000 genomes]
rs9311762	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs9878437	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs9878446	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs9882907	0.92[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009971	chr3:60070974-60397331	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010969	chr3:60124962-60425297	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2422232	chr3:60192201-60334555	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv876844	chr3:60256485-60362565	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv876845	chr3:60256485-60367607	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1001134	chr3:60262617-60344190	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv590394	chr3:60289140-60388900	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv999794	chr3:60301059-60332871	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1011408	chr3:60307954-60417143	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60296000-60312200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:60302600-60311400	Weak transcription	Fetal Lung	lung
3	chr3:60308200-60311400	Weak transcription	Fetal Intestine Large	intestine
4	chr3:60308800-60309400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:60308800-60309400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:60309000-60312200	Weak transcription	Lung	lung
7	chr3:60309200-60309600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:60309200-60309600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:60309200-60309600	Enhancers	Pancreas	Pancrea
10	chr3:60309200-60309600	Enhancers	K562	blood
11	chr3:60309200-60309800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:60309200-60309800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:60309200-60310000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:60309200-60310000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:60309200-60310000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:60309200-60310800	Enhancers	Dnd41	blood

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