Variant report

Variant	rs6809971
Chromosome Location	chr3:85124533-85124534
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1376937	0.81[AMR][1000 genomes]
rs17022413	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17022521	0.81[AMR][1000 genomes]
rs17022531	0.81[AMR][1000 genomes]
rs17022571	0.81[AMR][1000 genomes]
rs1901545	0.81[AMR][1000 genomes]
rs2101343	0.82[AMR][1000 genomes]
rs2167605	0.91[AMR][1000 genomes]
rs28658170	0.81[AMR][1000 genomes]
rs28706252	0.81[AMR][1000 genomes]
rs41495948	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56701506	0.82[AMR][1000 genomes]
rs57628546	0.81[AMR][1000 genomes]
rs58051057	0.81[AMR][1000 genomes]
rs58222692	0.81[AMR][1000 genomes]
rs59867516	0.81[AMR][1000 genomes]
rs59905205	0.81[AMR][1000 genomes]
rs59907126	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60184399	0.81[AMR][1000 genomes]
rs60222151	0.81[AMR][1000 genomes]
rs60319509	0.81[AMR][1000 genomes]
rs61212713	0.91[AMR][1000 genomes]
rs6770568	0.82[AMR][1000 genomes]
rs6783617	0.82[AMR][1000 genomes]
rs6804299	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72903365	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72903370	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72903381	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72903386	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72905240	0.91[AMR][1000 genomes]
rs72905270	0.82[AMR][1000 genomes]
rs72905294	0.81[AMR][1000 genomes]
rs72905295	0.81[AMR][1000 genomes]
rs72907103	0.81[AMR][1000 genomes]
rs72907149	0.81[AMR][1000 genomes]
rs72907158	0.81[AMR][1000 genomes]
rs72907161	0.81[AMR][1000 genomes]
rs72907167	0.81[AMR][1000 genomes]
rs72907169	0.81[AMR][1000 genomes]
rs72907192	0.81[AMR][1000 genomes]
rs72909170	0.91[AMR][1000 genomes]
rs72909172	0.91[AMR][1000 genomes]
rs72909174	0.91[AMR][1000 genomes]
rs72909176	0.91[AMR][1000 genomes]
rs7614097	0.81[AMR][1000 genomes]
rs7632253	0.91[AMR][1000 genomes]
rs7643603	0.81[AMR][1000 genomes]
rs7644008	0.81[AMR][1000 genomes]
rs9917693	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85106200-85127400	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:85116600-85130400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:85118200-85130400	Weak transcription	Brain Substantia Nigra	brain
4	chr3:85122400-85130800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:85123200-85125600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:85123600-85124800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:85123800-85124600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:85124200-85127200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:85124200-85130400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:85124400-85125400	Enhancers	HUES64 Cell Line	embryonic stem cell

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