Variant report

Variant	rs6810857
Chromosome Location	chr4:56923572-56923573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56918589..56921533-chr4:56921686..56923610,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1108947	0.82[EUR][1000 genomes]
rs1108948	0.82[EUR][1000 genomes]
rs11934389	0.82[EUR][1000 genomes]
rs13102087	0.83[EUR][1000 genomes]
rs13113844	0.82[EUR][1000 genomes]
rs13121092	0.80[EUR][1000 genomes]
rs13139132	0.85[EUR][1000 genomes]
rs13147381	0.83[EUR][1000 genomes]
rs2412717	0.82[EUR][1000 genomes]
rs2412718	0.82[EUR][1000 genomes]
rs2412719	0.81[EUR][1000 genomes]
rs2412728	0.85[EUR][1000 genomes]
rs2611818	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2702332	0.84[EUR][1000 genomes]
rs34181414	0.82[EUR][1000 genomes]
rs34683632	0.82[EUR][1000 genomes]
rs34796075	0.81[EUR][1000 genomes]
rs35400594	0.82[EUR][1000 genomes]
rs35770075	0.82[EUR][1000 genomes]
rs35786306	0.82[EUR][1000 genomes]
rs35786805	0.83[EUR][1000 genomes]
rs4364320	0.82[EUR][1000 genomes]
rs58795379	0.82[EUR][1000 genomes]
rs6554328	0.82[EUR][1000 genomes]
rs6839220	0.81[EUR][1000 genomes]
rs71601617	0.81[EUR][1000 genomes]
rs7659694	0.82[EUR][1000 genomes]
rs7685766	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2641155	chr4:56923506-56925017	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56916400-56936200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:56916600-56929400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:56916600-56931600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:56916600-56934200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:56917200-56923600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:56917200-56934600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:56921000-56923600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:56921200-56923800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:56921200-56923800	Enhancers	Fetal Intestine Large	intestine
10	chr4:56921200-56923800	Enhancers	Fetal Intestine Small	intestine
11	chr4:56921200-56923800	Enhancers	HepG2	liver
12	chr4:56922000-56926200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:56922000-56927200	Weak transcription	Fetal Brain Male	brain
14	chr4:56922000-56934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:56922000-56934400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:56922000-56935600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr4:56922200-56925600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:56922200-56926600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:56922200-56928600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:56922200-56934000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:56922200-56935000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:56922400-56924600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:56922400-56924600	Weak transcription	Fetal Lung	lung
24	chr4:56922400-56926200	Weak transcription	Fetal Kidney	kidney
25	chr4:56922600-56924600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:56922600-56924600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:56922600-56924600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr4:56922600-56926800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr4:56922800-56924600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr4:56922800-56926200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:56922800-56934000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:56922800-56934200	Weak transcription	Fetal Stomach	stomach
33	chr4:56922800-56934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:56923000-56924600	Weak transcription	Fetal Brain Female	brain
35	chr4:56923200-56923600	Enhancers	Small Intestine	intestine
36	chr4:56923400-56923600	Enhancers	Brain Germinal Matrix	brain
37	chr4:56923400-56923600	Enhancers	Ovary	ovary
38	chr4:56923400-56928000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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