Variant report

Variant	rs6811022
Chromosome Location	chr4:143759353-143759354
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143757278..143761783-chr4:143763336..143768943,6	MCF-7	breast:
2	chr4:143393242..143395860-chr4:143757386..143759845,3	MCF-7	breast:
3	chr4:143395579..143398506-chr4:143758143..143759826,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11100754	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11100761	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939835	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11943397	0.81[JPT][hapmap]
rs13112916	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13122287	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13145724	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372239	0.84[CHB][hapmap]
rs1373036	0.85[CHB][hapmap]
rs1441411	0.81[ASN][1000 genomes]
rs1441417	0.86[ASN][1000 genomes]
rs1441418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444950	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1899565	0.81[JPT][hapmap]
rs191762	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1992652	0.84[ASN][1000 genomes]
rs2120158	0.81[JPT][hapmap]
rs2218240	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416530	0.86[ASN][1000 genomes]
rs4575951	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690698	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs4690699	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4690728	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690730	0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs60263370	0.84[ASN][1000 genomes]
rs6537124	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6537127	0.93[ASN][1000 genomes]
rs6537130	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6813785	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6831204	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839158	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs6846609	0.80[ASN][1000 genomes]
rs6852570	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72615963	0.82[ASN][1000 genomes]
rs72728700	0.84[ASN][1000 genomes]
rs72730409	0.82[ASN][1000 genomes]
rs73850583	0.82[ASN][1000 genomes]
rs7660533	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668263	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7670139	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685997	0.84[ASN][1000 genomes]
rs9994364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143750600-143760000	Weak transcription	Left Ventricle	heart
3	chr4:143750800-143762200	Weak transcription	Fetal Heart	heart
4	chr4:143753800-143761000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143756600-143761000	Weak transcription	Dnd41	blood
6	chr4:143758800-143762600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143759000-143760200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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