Variant report

Variant	rs6812584
Chromosome Location	chr4:86684489-86684490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11941635	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs13108185	0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13110649	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1452678	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2869383	0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4362811	0.84[YRI][hapmap]
rs4693125	0.83[YRI][hapmap]
rs7682809	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs9993320	0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86663400-86699800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86674800-86685400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:86676800-86697800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:86678200-86685200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:86679000-86684600	Strong transcription	Primary B cells from peripheral blood	blood
6	chr4:86680400-86685600	Enhancers	Osteobl	bone
7	chr4:86681000-86684800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:86681600-86684800	Enhancers	Fetal Stomach	stomach
9	chr4:86681800-86684600	Enhancers	Adipose Nuclei	Adipose
10	chr4:86681800-86684800	Enhancers	Fetal Muscle Leg	muscle
11	chr4:86682000-86685200	Enhancers	NHDF-Ad	bronchial
12	chr4:86682000-86697000	Weak transcription	Psoas Muscle	Psoas
13	chr4:86682800-86684600	Enhancers	Brain Substantia Nigra	brain
14	chr4:86682800-86684600	Flanking Active TSS	HUVEC	blood vessel
15	chr4:86682800-86684800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:86682800-86684800	Enhancers	Right Atrium	heart
17	chr4:86683000-86684600	Weak transcription	Pancreas	Pancrea
18	chr4:86683000-86685000	Enhancers	Fetal Lung	lung
19	chr4:86683200-86684800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr4:86683200-86699000	Weak transcription	Primary B cells from cord blood	blood
21	chr4:86683400-86684600	Enhancers	Brain Hippocampus Middle	brain
22	chr4:86683400-86684800	Enhancers	HSMM	muscle
23	chr4:86683600-86684600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:86683600-86684600	Enhancers	A549	lung
25	chr4:86683800-86686600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:86683800-86695200	Weak transcription	HMEC	breast
27	chr4:86684000-86684600	Enhancers	NH-A	brain
28	chr4:86684000-86685600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:86684000-86685600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr4:86684000-86685600	Enhancers	NHLF	lung
31	chr4:86684000-86688600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:86684200-86684600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:86684200-86684800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:86684200-86684800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:86684200-86685600	Weak transcription	Brain Anterior Caudate	brain
36	chr4:86684200-86685800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:86684400-86684800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:86684400-86684800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr4:86684400-86684800	Enhancers	Gastric	stomach
40	chr4:86684400-86684800	Enhancers	Ovary	ovary
41	chr4:86684400-86684800	Enhancers	Small Intestine	intestine
42	chr4:86684400-86685200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:86684400-86685800	Weak transcription	Fetal Kidney	kidney
44	chr4:86684400-86687600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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