Variant report

Variant	rs6813762
Chromosome Location	chr4:119994860-119994861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16997547	1.00[EUR][1000 genomes]
rs16997549	1.00[EUR][1000 genomes]
rs17050041	1.00[EUR][1000 genomes]
rs17050049	1.00[EUR][1000 genomes]
rs17050052	1.00[EUR][1000 genomes]
rs17050056	1.00[EUR][1000 genomes]
rs17050139	0.83[AMR][1000 genomes]
rs28703190	1.00[EUR][1000 genomes]
rs57214946	1.00[EUR][1000 genomes]
rs57626477	1.00[EUR][1000 genomes]
rs60317087	1.00[EUR][1000 genomes]
rs6824074	1.00[EUR][1000 genomes]
rs6837925	1.00[EUR][1000 genomes]
rs6839198	1.00[EUR][1000 genomes]
rs6843548	1.00[EUR][1000 genomes]
rs6854148	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907289	1.00[EUR][1000 genomes]
rs72908513	1.00[EUR][1000 genomes]
rs7678499	1.00[EUR][1000 genomes]
rs7678948	1.00[EUR][1000 genomes]
rs9684201	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119975800-120003000	Weak transcription	Left Ventricle	heart
2	chr4:119979200-119996400	Weak transcription	Aorta	Aorta
3	chr4:119992600-119999800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:119994000-119995000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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