Variant report

Variant	rs6814142
Chromosome Location	chr4:143814929-143814930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11931930	0.97[AFR][1000 genomes]
rs11936161	0.97[AFR][1000 genomes]
rs11938074	0.97[AFR][1000 genomes]
rs11945219	0.97[AFR][1000 genomes]
rs11945221	0.97[AFR][1000 genomes]
rs11946952	0.97[AFR][1000 genomes]
rs17016810	1.00[ASN][1000 genomes]
rs17016812	1.00[ASN][1000 genomes]
rs17016916	0.97[AFR][1000 genomes]
rs17016965	0.97[AFR][1000 genomes]
rs17016976	0.97[AFR][1000 genomes]
rs28378768	1.00[ASN][1000 genomes]
rs28642248	1.00[ASN][1000 genomes]
rs57434180	1.00[ASN][1000 genomes]
rs58691249	1.00[ASN][1000 genomes]
rs60144874	1.00[ASN][1000 genomes]
rs60837660	0.97[AFR][1000 genomes]
rs72937904	1.00[ASN][1000 genomes]
rs72937983	0.97[AFR][1000 genomes]
rs72939905	0.97[AFR][1000 genomes]
rs72939914	0.97[AFR][1000 genomes]
rs72939918	0.97[AFR][1000 genomes]
rs72939930	0.97[AFR][1000 genomes]
rs7435181	0.94[AFR][1000 genomes]
rs7657815	0.88[AFR][1000 genomes]
rs7661683	0.90[ASN][1000 genomes]
rs7674856	0.88[AFR][1000 genomes]
rs7694316	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10580	chr4:143794158-143856359	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143814600-143815200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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