Variant report

Variant	rs68150601
Chromosome Location	chr3:119401378-119401379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119397978..119400630-chr3:119401218..119403216,2	MCF-7	breast:
2	chr3:118876250..118878600-chr3:119400821..119403241,2	MCF-7	breast:
3	chr3:119276867..119278435-chr3:119399645..119402371,2	MCF-7	breast:
4	chr3:119394872..119397577-chr3:119400469..119404472,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138495	Chromatin interaction
ENSG00000121594	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1124723	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1124724	0.84[AMR][1000 genomes]
rs11914676	0.92[ASN][1000 genomes]
rs11923223	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12487499	0.86[ASN][1000 genomes]
rs12488460	0.86[ASN][1000 genomes]
rs12490779	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12492456	0.89[ASN][1000 genomes]
rs12493022	0.85[AMR][1000 genomes]
rs13061374	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13061497	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1403631	0.87[ASN][1000 genomes]
rs1525836	0.87[ASN][1000 genomes]
rs16830115	0.89[ASN][1000 genomes]
rs16830291	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17203235	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1797827	0.89[ASN][1000 genomes]
rs1851611	0.84[AMR][1000 genomes]
rs1872432	0.88[ASN][1000 genomes]
rs1905788	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1905790	0.80[AMR][1000 genomes]
rs1985121	0.87[ASN][1000 genomes]
rs2102627	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2137619	0.84[AMR][1000 genomes]
rs2280578	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2670292	0.87[ASN][1000 genomes]
rs2688629	0.89[ASN][1000 genomes]
rs2688630	0.89[ASN][1000 genomes]
rs2688631	0.89[ASN][1000 genomes]
rs2688634	0.84[ASN][1000 genomes]
rs2698283	0.88[ASN][1000 genomes]
rs34097211	0.89[ASN][1000 genomes]
rs34593263	0.86[ASN][1000 genomes]
rs34787881	0.89[ASN][1000 genomes]
rs35043554	0.86[ASN][1000 genomes]
rs35256565	0.89[ASN][1000 genomes]
rs3844090	0.84[AMR][1000 genomes]
rs3924065	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4234662	0.87[ASN][1000 genomes]
rs4485753	0.81[AMR][1000 genomes]
rs4585237	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4629367	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687869	0.87[ASN][1000 genomes]
rs4688021	0.87[ASN][1000 genomes]
rs4688024	0.92[ASN][1000 genomes]
rs524043	0.87[ASN][1000 genomes]
rs525916	0.87[ASN][1000 genomes]
rs540420	0.87[ASN][1000 genomes]
rs56042515	0.81[AMR][1000 genomes]
rs572119	0.90[ASN][1000 genomes]
rs575833	0.87[ASN][1000 genomes]
rs579196	0.89[ASN][1000 genomes]
rs67683909	0.87[ASN][1000 genomes]
rs6783324	0.87[ASN][1000 genomes]
rs6789941	0.80[ASN][1000 genomes]
rs6790938	0.82[EUR][1000 genomes]
rs6792417	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6803814	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71325388	0.86[ASN][1000 genomes]
rs71325389	0.85[ASN][1000 genomes]
rs71325397	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7613825	0.86[ASN][1000 genomes]
rs7626940	0.81[AMR][1000 genomes]
rs8422	0.89[ASN][1000 genomes]
rs940182	0.80[EUR][1000 genomes]
rs940183	0.81[AMR][1000 genomes]
rs9876919	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1014394	chr3:119360506-119412275	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv460834	chr3:119384163-119458851	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv591390	chr3:119384163-119458851	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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