Variant report

Variant	rs68158881
Chromosome Location	chr14:56274126-56274127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:56273918..56276327-chr14:56286651..56288892,2	MCF-7	breast:
2	chr14:56269404..56272163-chr14:56272459..56274714,3	MCF-7	breast:
3	chr14:56256977..56259600-chr14:56273193..56275837,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10459511	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158055	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12587196	0.81[EUR][1000 genomes]
rs4901604	0.94[EUR][1000 genomes]
rs66706427	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56269200-56275200	Enhancers	Fetal Intestine Small	intestine
2	chr14:56269600-56275200	Enhancers	Pancreas	Pancrea
3	chr14:56270600-56275200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr14:56271200-56275200	Enhancers	Fetal Intestine Large	intestine
5	chr14:56271600-56275200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:56271800-56274200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr14:56271800-56274800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:56272000-56274200	Enhancers	Duodenum Mucosa	Duodenum
9	chr14:56272000-56274200	Enhancers	Fetal Heart	heart
10	chr14:56272000-56274400	Weak transcription	Gastric	stomach
11	chr14:56272000-56275200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:56272400-56275400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr14:56272600-56274200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr14:56273200-56274800	Enhancers	Left Ventricle	heart
15	chr14:56273200-56274800	Enhancers	HMEC	breast
16	chr14:56273400-56274200	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr14:56273400-56274400	Enhancers	Fetal Thymus	thymus
18	chr14:56273400-56274400	Enhancers	A549	lung
19	chr14:56273400-56274600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:56273400-56274600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:56273400-56274600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:56273400-56274600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:56273400-56274600	Enhancers	Thymus	Thymus
24	chr14:56273400-56274600	Flanking Active TSS	Hela-S3	cervix
25	chr14:56273400-56274800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:56273400-56274800	Enhancers	Right Atrium	heart
27	chr14:56273400-56274800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr14:56273400-56274800	Enhancers	NHEK	skin
29	chr14:56273400-56275000	Enhancers	Colonic Mucosa	Colon
30	chr14:56273400-56275000	Enhancers	Small Intestine	intestine
31	chr14:56273400-56275000	Enhancers	HUVEC	blood vessel
32	chr14:56273400-56275200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr14:56273400-56275200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr14:56273400-56275200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:56273600-56274200	Enhancers	Colon Smooth Muscle	Colon
36	chr14:56273600-56274400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr14:56273600-56274400	Active TSS	Rectal Smooth Muscle	rectum
38	chr14:56273600-56274400	Enhancers	K562	blood
39	chr14:56273600-56274600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:56273600-56274600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr14:56273600-56274600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr14:56273600-56274600	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr14:56273600-56274600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:56273600-56274600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:56273600-56274600	Enhancers	Brain Germinal Matrix	brain
46	chr14:56273600-56274600	Enhancers	Fetal Kidney	kidney
47	chr14:56273600-56274600	Enhancers	Psoas Muscle	Psoas
48	chr14:56273600-56274800	Enhancers	Esophagus	oesophagus
49	chr14:56273600-56274800	Enhancers	Fetal Muscle Leg	muscle
50	chr14:56273600-56274800	Enhancers	Lung	lung

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