Variant report

Variant	rs6817186
Chromosome Location	chr4:166266148-166266149
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166260940..166262583-chr4:166265474..166268224,2	K562	blood:
2	chr4:166249129..166252121-chr4:166265324..166266921,2	K562	blood:
3	chr4:166051363..166053095-chr4:166265302..166266870,2	MCF-7	breast:
4	chr4:166262631..166267437-chr4:166267990..166271315,4	K562	blood:
5	chr4:166052311..166053023-chr4:166265996..166266912,2	MCF-7	breast:
6	chr4:166265012..166266616-chr4:166301468..166303091,2	K562	blood:
7	chr4:166248172..166250457-chr4:166265165..166267668,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10002711	0.87[AFR][1000 genomes]
rs10003171	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs10015275	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10021532	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024839	0.87[AFR][1000 genomes]
rs10024849	0.87[AFR][1000 genomes]
rs10024953	0.85[AFR][1000 genomes]
rs10025186	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10025377	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10031858	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10517835	0.93[LWK][hapmap];0.91[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs1059209	0.93[LWK][hapmap];0.88[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs1059210	0.93[LWK][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs1059212	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs1059214	0.84[LWK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs1136537	0.87[AFR][1000 genomes]
rs13106028	0.89[EUR][1000 genomes]
rs13137171	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13918	0.93[LWK][hapmap];0.91[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs17046253	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs17046259	0.91[LWK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs17046337	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17046351	0.89[EUR][1000 genomes]
rs17585655	0.90[EUR][1000 genomes]
rs17585739	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs28484900	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28735257	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6536905	0.83[AFR][1000 genomes]
rs6536909	0.92[EUR][1000 genomes]
rs6822290	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6839161	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs6842704	0.91[EUR][1000 genomes]
rs6846664	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6853552	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs72701627	0.92[EUR][1000 genomes]
rs72701628	0.94[EUR][1000 genomes]
rs72701629	0.94[EUR][1000 genomes]
rs72701630	0.94[EUR][1000 genomes]
rs72701632	0.96[EUR][1000 genomes]
rs72701634	0.96[EUR][1000 genomes]
rs72701636	0.96[EUR][1000 genomes]
rs72701637	0.92[EUR][1000 genomes]
rs72701639	0.92[EUR][1000 genomes]
rs72701642	0.92[EUR][1000 genomes]
rs72701645	0.92[EUR][1000 genomes]
rs72701652	0.90[EUR][1000 genomes]
rs72701657	0.92[EUR][1000 genomes]
rs72701659	0.92[EUR][1000 genomes]
rs72701664	0.92[EUR][1000 genomes]
rs7656675	0.92[EUR][1000 genomes]
rs7657847	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7671176	0.91[EUR][1000 genomes]
rs7679322	0.88[EUR][1000 genomes]
rs7679808	0.94[EUR][1000 genomes]
rs7696111	0.89[EUR][1000 genomes]
rs9308102	0.85[AFR][1000 genomes]
rs9308103	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs9997634	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv2763404	chr4:166265940-166275340	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166250600-166266800	Weak transcription	A549	lung
3	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
4	chr4:166252200-166269400	Weak transcription	Gastric	stomach
5	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
7	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
8	chr4:166255800-166266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:166259000-166267800	Weak transcription	Fetal Brain Male	brain
10	chr4:166259800-166266800	Weak transcription	Brain Angular Gyrus	brain
11	chr4:166260600-166266600	Weak transcription	Fetal Stomach	stomach
12	chr4:166260600-166268400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:166261200-166266200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:166261400-166267000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:166261400-166267000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:166261400-166267000	Weak transcription	Ovary	ovary
17	chr4:166261400-166272600	Weak transcription	HSMMtube	muscle
18	chr4:166261600-166266600	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:166261600-166266800	Weak transcription	Primary T cells from cord blood	blood
20	chr4:166261600-166266800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:166261600-166267000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:166261600-166267400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:166261600-166272800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:166261800-166267600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr4:166261800-166267800	Weak transcription	Brain Germinal Matrix	brain
26	chr4:166262000-166266800	Weak transcription	Fetal Kidney	kidney
27	chr4:166262000-166267200	Weak transcription	NHEK	skin
28	chr4:166262000-166267400	Weak transcription	HepG2	liver
29	chr4:166262000-166268000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:166262000-166268200	Weak transcription	Fetal Lung	lung
31	chr4:166262200-166267200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:166262400-166266800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:166262800-166266800	Weak transcription	Brain Anterior Caudate	brain
34	chr4:166263000-166266800	Weak transcription	Fetal Brain Female	brain
35	chr4:166263200-166266200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr4:166263200-166266600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr4:166263200-166266800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:166263200-166266800	Weak transcription	Fetal Intestine Large	intestine
39	chr4:166263200-166267000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr4:166263200-166269200	Weak transcription	K562	blood
41	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
42	chr4:166263400-166272800	Weak transcription	NH-A	brain
43	chr4:166264000-166266600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:166264000-166267000	Weak transcription	NHLF	lung
45	chr4:166264000-166269000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr4:166264000-166271600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr4:166264000-166274600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr4:166264200-166274800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr4:166264400-166270200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:166264600-166266200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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