Variant report

Variant	rs6817469
Chromosome Location	chr4:148372306-148372307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10305860	0.85[ASN][1000 genomes]
rs10305862	0.85[ASN][1000 genomes]
rs11100963	0.97[ASN][1000 genomes]
rs11722878	0.83[ASN][1000 genomes]
rs11722942	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11727337	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11727397	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11730985	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11731096	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11731097	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11731134	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12509416	0.95[ASN][1000 genomes]
rs12642328	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13109203	0.87[ASN][1000 genomes]
rs13109209	0.87[ASN][1000 genomes]
rs13112065	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13127894	0.91[ASN][1000 genomes]
rs13138887	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13144507	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1366688	0.95[ASN][1000 genomes]
rs1400558	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1400559	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1400560	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1517134	0.82[ASN][1000 genomes]
rs1517138	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1517139	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1801708	0.85[ASN][1000 genomes]
rs1808038	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1949375	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1996373	0.82[ASN][1000 genomes]
rs1996374	0.84[ASN][1000 genomes]
rs2063936	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34256803	0.97[ASN][1000 genomes]
rs35686091	0.97[ASN][1000 genomes]
rs36129328	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4631019	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4835081	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835083	0.85[ASN][1000 genomes]
rs4835084	0.85[ASN][1000 genomes]
rs4835401	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835405	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835407	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835410	0.85[ASN][1000 genomes]
rs56015601	0.85[ASN][1000 genomes]
rs6537479	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6537480	0.86[ASN][1000 genomes]
rs6810637	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6820938	0.86[ASN][1000 genomes]
rs6823537	0.85[ASN][1000 genomes]
rs6835512	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6840108	0.90[ASN][1000 genomes]
rs6840784	0.91[ASN][1000 genomes]
rs6853791	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6855875	0.83[ASN][1000 genomes]
rs702757	0.85[ASN][1000 genomes]
rs7659823	0.86[ASN][1000 genomes]
rs7663891	0.85[ASN][1000 genomes]
rs9308218	0.85[ASN][1000 genomes]
rs952402	0.85[ASN][1000 genomes]
rs959600	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984457	0.85[ASN][1000 genomes]
rs984458	0.85[ASN][1000 genomes]
rs9991584	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148369400-148374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:148369600-148374600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:148369600-148374600	Weak transcription	HMEC	breast
4	chr4:148369600-148374600	Weak transcription	NHEK	skin
5	chr4:148369600-148374800	Weak transcription	Hela-S3	cervix

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