Variant report

Variant	rs6819574
Chromosome Location	chr4:56912111-56912112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56815530..56818223-chr4:56910044..56912161,2	K562	blood:
2	chr4:56907216..56909434-chr4:56911835..56913901,2	K562	blood:
3	chr4:56910116..56913071-chr4:56914589..56916091,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10517367	0.91[ASN][1000 genomes]
rs11721368	0.83[EUR][1000 genomes]
rs11934389	0.80[EUR][1000 genomes]
rs11938852	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13102087	0.81[EUR][1000 genomes]
rs13112752	0.93[ASN][1000 genomes]
rs13113844	0.80[EUR][1000 genomes]
rs13139132	0.84[EUR][1000 genomes]
rs17086249	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2412717	0.80[EUR][1000 genomes]
rs2412718	0.80[EUR][1000 genomes]
rs2412720	0.93[ASN][1000 genomes]
rs2412721	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2412722	0.93[ASN][1000 genomes]
rs2412725	0.88[ASN][1000 genomes]
rs2412726	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2412728	0.85[EUR][1000 genomes]
rs2611818	0.80[EUR][1000 genomes]
rs2702332	0.83[EUR][1000 genomes]
rs2899054	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34181414	0.80[EUR][1000 genomes]
rs34546346	0.83[ASN][1000 genomes]
rs34577487	0.93[ASN][1000 genomes]
rs35400594	0.80[EUR][1000 genomes]
rs35736349	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35786306	0.80[EUR][1000 genomes]
rs35786805	0.81[EUR][1000 genomes]
rs35976456	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36092812	0.84[ASN][1000 genomes]
rs4355456	0.95[ASN][1000 genomes]
rs4364320	0.80[EUR][1000 genomes]
rs4645275	0.95[ASN][1000 genomes]
rs58795379	0.80[EUR][1000 genomes]
rs59053231	0.90[ASN][1000 genomes]
rs59838410	0.83[ASN][1000 genomes]
rs60296378	0.83[ASN][1000 genomes]
rs6554328	0.80[EUR][1000 genomes]
rs6826903	0.93[ASN][1000 genomes]
rs6836376	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6839870	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73155600	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73155601	0.95[ASN][1000 genomes]
rs73162699	0.91[ASN][1000 genomes]
rs73162701	0.86[ASN][1000 genomes]
rs7659694	0.80[EUR][1000 genomes]
rs7672541	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676365	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6819574	KIAA1211	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56907800-56914000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:56908400-56914600	Weak transcription	GM12878-XiMat	blood
3	chr4:56909600-56914600	Weak transcription	Primary B cells from peripheral blood	blood

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