Variant report

Variant	rs6822263
Chromosome Location	chr4:143361341-143361342
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10012476	0.85[CEU][hapmap]
rs1013397	0.85[CEU][hapmap]
rs12644565	1.00[CEU][hapmap]
rs1603584	0.86[EUR][1000 genomes]
rs17016170	0.85[CEU][hapmap]
rs1817970	0.81[ASN][1000 genomes]
rs2322705	0.85[CEU][hapmap]
rs3913164	0.85[CEU][hapmap]
rs4345256	0.85[CEU][hapmap]
rs67960473	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662794	0.82[CHB][hapmap]
rs7668133	0.85[CEU][hapmap]
rs7687147	0.82[ASN][1000 genomes]
rs7695918	0.85[CEU][hapmap]
rs9308152	0.85[CEU][hapmap]
rs931637	1.00[CEU][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs979511	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986090	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143338600-143366600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143351200-143364800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:143351200-143371200	Weak transcription	Pancreas	Pancrea
4	chr4:143355600-143361400	Weak transcription	Gastric	stomach
5	chr4:143355800-143367600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:143357200-143365600	Weak transcription	Thymus	Thymus
7	chr4:143357400-143371200	Weak transcription	Aorta	Aorta
8	chr4:143357600-143367800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:143361000-143361600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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