Variant report

Variant	rs6822703
Chromosome Location	chr4:143751106-143751107
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10519666	0.81[AMR][1000 genomes]
rs11736709	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939835	0.80[ASN][1000 genomes]
rs1441411	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1441417	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1444949	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1992652	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28416530	0.80[ASN][1000 genomes]
rs4690729	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4690730	0.80[ASN][1000 genomes]
rs58445560	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60263370	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6537129	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6813785	0.80[ASN][1000 genomes]
rs6823627	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6828896	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6838663	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6839158	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6846609	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72728681	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72728686	0.81[AMR][1000 genomes]
rs72728694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728700	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72730409	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73850583	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7656375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7663475	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668263	0.80[ASN][1000 genomes]
rs7685997	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7695461	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143741200-143751800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:143744000-143753200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:143747200-143751600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:143750600-143752200	Weak transcription	Fetal Lung	lung
6	chr4:143750600-143760000	Weak transcription	Left Ventricle	heart
7	chr4:143750800-143762200	Weak transcription	Fetal Heart	heart

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