Variant report

Variant	rs6823434
Chromosome Location	chr4:144199853-144199854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10012713	0.87[ASN][1000 genomes]
rs10028909	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643013	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13114280	0.80[ASN][1000 genomes]
rs13118846	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13129434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137362	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532981	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2012599	0.81[AMR][1000 genomes]
rs2119269	0.80[ASN][1000 genomes]
rs300890	0.85[AMR][1000 genomes]
rs300891	0.84[AMR][1000 genomes]
rs300892	0.84[AMR][1000 genomes]
rs300893	0.84[AMR][1000 genomes]
rs300895	0.84[AMR][1000 genomes]
rs300904	0.84[AMR][1000 genomes]
rs300905	0.85[AMR][1000 genomes]
rs300943	0.89[ASN][1000 genomes]
rs300946	0.89[ASN][1000 genomes]
rs300947	0.89[ASN][1000 genomes]
rs300951	0.95[ASN][1000 genomes]
rs300953	0.95[ASN][1000 genomes]
rs568685	0.81[AMR][1000 genomes]
rs592349	0.87[ASN][1000 genomes]
rs62337488	0.84[AMR][1000 genomes]
rs624189	0.85[AMR][1000 genomes]
rs6537152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537153	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs666542	0.87[ASN][1000 genomes]
rs6840603	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs763918	0.80[ASN][1000 genomes]
rs7655782	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7690761	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144197800-144202600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:144199800-144200400	Enhancers	Adipose Nuclei	Adipose

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