Variant report

Variant	rs6823627
Chromosome Location	chr4:143745608-143745609
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143741827..143744468-chr4:143744792..143746567,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1031104	0.90[CHB][hapmap]
rs10857399	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs11736709	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11939835	0.80[ASN][1000 genomes]
rs11943397	0.81[CHB][hapmap]
rs12650777	0.89[CHB][hapmap]
rs1441411	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1441417	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1441418	0.88[CEU][hapmap]
rs1443187	0.86[CHB][hapmap]
rs1444949	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016768	1.00[CHB][hapmap]
rs1899565	0.81[CHB][hapmap]
rs1992417	0.81[AMR][1000 genomes]
rs1992418	0.81[AMR][1000 genomes]
rs1992652	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2120158	0.81[CHB][hapmap]
rs2218240	0.83[CEU][hapmap]
rs28416530	0.80[ASN][1000 genomes]
rs331945	1.00[CHB][hapmap]
rs4690728	0.83[CEU][hapmap]
rs4690729	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4690730	0.80[ASN][1000 genomes]
rs58445560	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60263370	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6537129	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6811022	0.88[CEU][hapmap]
rs6813785	0.80[ASN][1000 genomes]
rs6822703	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6828896	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6830053	0.90[CHB][hapmap]
rs6838663	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6839158	0.85[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.92[TSI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6846609	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72728681	0.85[ASN][1000 genomes]
rs72728694	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728700	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72730409	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73850583	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7656375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7663475	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7666140	1.00[CHB][hapmap]
rs7668263	0.80[ASN][1000 genomes]
rs7685997	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7695461	0.80[ASN][1000 genomes]
rs9994364	0.88[CEU][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143732600-143749600	Weak transcription	Right Ventricle	heart
2	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143741200-143746600	Weak transcription	Fetal Heart	heart
4	chr4:143741200-143751800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143744000-143753200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:143745000-143746000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:143745000-143747800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:143745400-143745800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:143745400-143746000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:143745400-143746400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:143745400-143746400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:143745400-143748000	Weak transcription	Left Ventricle	heart
13	chr4:143745600-143747200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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