Variant report

Variant	rs6823869
Chromosome Location	chr4:148292539-148292540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1005771	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1346599	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1366692	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1366694	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1429101	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1429127	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1429138	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1429140	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1560228	0.87[AMR][1000 genomes]
rs1981987	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2115561	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2714904	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4835078	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835079	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835396	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6816629	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6817192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694172	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs934142	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148281600-148297000	Weak transcription	Left Ventricle	heart
2	chr4:148284800-148293000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:148288800-148293600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:148288800-148293600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:148288800-148293600	Enhancers	NH-A	brain
6	chr4:148288800-148293600	Enhancers	NHDF-Ad	bronchial
7	chr4:148290200-148293600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:148290200-148293800	Enhancers	HMEC	breast
9	chr4:148290400-148293600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:148290400-148293800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:148290600-148292800	Enhancers	Fetal Intestine Small	intestine
12	chr4:148290600-148293400	Enhancers	Osteobl	bone
13	chr4:148291200-148292600	Enhancers	Small Intestine	intestine
14	chr4:148291200-148293400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:148291400-148292800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr4:148291400-148293400	Enhancers	Stomach Mucosa	stomach
17	chr4:148291600-148293000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:148291600-148293400	Enhancers	Hela-S3	cervix
19	chr4:148291600-148293600	Enhancers	HSMM	muscle
20	chr4:148291600-148293600	Enhancers	HUVEC	blood vessel
21	chr4:148291800-148293000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:148292200-148292600	Enhancers	Duodenum Mucosa	Duodenum
23	chr4:148292200-148293400	Enhancers	NHLF	lung
24	chr4:148292400-148292600	Enhancers	NHEK	skin
25	chr4:148292400-148293200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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