Variant report

Variant	rs6825478
Chromosome Location	chr4:48064045-48064046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1507923	1.00[AMR][1000 genomes]
rs2581495	1.00[AMR][1000 genomes]
rs2661545	1.00[AMR][1000 genomes]
rs2882951	1.00[AMR][1000 genomes]
rs321629	1.00[AMR][1000 genomes]
rs321648	1.00[AMR][1000 genomes]
rs6830656	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48061200-48075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:48061400-48068200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:48061600-48068600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:48061800-48066400	Weak transcription	Primary T cells from cord blood	blood
5	chr4:48061800-48068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:48062000-48065800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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