Variant report

Variant	rs6826765
Chromosome Location	chr4:7816405-7816406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10009556	1.00[AMR][1000 genomes]
rs16841093	1.00[AMR][1000 genomes]
rs16841096	1.00[AMR][1000 genomes]
rs28474880	1.00[AMR][1000 genomes]
rs28679329	1.00[AMR][1000 genomes]
rs4376136	1.00[AMR][1000 genomes]
rs6839506	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7770800-7828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:7784000-7821200	Weak transcription	Small Intestine	intestine
3	chr4:7787000-7829400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr4:7791000-7829400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:7800600-7828800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:7802200-7819800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:7804000-7829200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:7805200-7822600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:7806200-7819200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:7806400-7824600	Weak transcription	Fetal Thymus	thymus
11	chr4:7807800-7817800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:7808000-7823000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:7808600-7830000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:7808800-7818400	Weak transcription	Psoas Muscle	Psoas
15	chr4:7809200-7816600	Weak transcription	Fetal Brain Male	brain
16	chr4:7809600-7819000	Genic enhancers	A549	lung
17	chr4:7809600-7822400	Weak transcription	Brain Substantia Nigra	brain
18	chr4:7809600-7823000	Weak transcription	Brain Angular Gyrus	brain
19	chr4:7809600-7828000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:7809800-7820000	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:7809800-7823400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:7809800-7823400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr4:7810000-7823400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:7810200-7821000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr4:7811200-7817400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr4:7811400-7819600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:7812800-7822200	Genic enhancers	NH-A	brain
28	chr4:7813400-7819800	Weak transcription	Right Atrium	heart
29	chr4:7813400-7825200	Weak transcription	Right Ventricle	heart
30	chr4:7813400-7829800	Weak transcription	Spleen	Spleen
31	chr4:7814000-7817600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:7814000-7818600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
33	chr4:7814000-7819800	Weak transcription	Colonic Mucosa	Colon
34	chr4:7814000-7821000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:7814000-7822200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:7814200-7816600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr4:7814200-7818800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:7814200-7822400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:7814200-7823000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr4:7814400-7817000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:7814400-7818200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr4:7814400-7819800	Strong transcription	Fetal Intestine Small	intestine
43	chr4:7814400-7823800	Weak transcription	Stomach Mucosa	stomach
44	chr4:7814400-7826600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:7814600-7819800	Weak transcription	Esophagus	oesophagus
46	chr4:7814600-7821800	Strong transcription	Adipose Nuclei	Adipose
47	chr4:7814600-7822200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:7814600-7822600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:7814600-7822600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr4:7814600-7824800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links