Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10003846	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10004039	0.81[ASN][1000 genomes]
rs10018517	0.81[ASN][1000 genomes]
rs10032338	0.81[ASN][1000 genomes]
rs10516736	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1116521	0.81[ASN][1000 genomes]
rs17005016	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17005020	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005022	0.87[EUR][1000 genomes]
rs17005025	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17005035	0.82[ASN][1000 genomes]
rs1960445	0.81[ASN][1000 genomes]
rs2088187	0.81[ASN][1000 genomes]
rs2201544	0.81[ASN][1000 genomes]
rs2868122	0.81[ASN][1000 genomes]
rs2868128	0.84[EUR][1000 genomes]
rs2903747	0.81[ASN][1000 genomes]
rs4458448	0.81[ASN][1000 genomes]
rs4693782	0.81[ASN][1000 genomes]
rs4693783	0.81[ASN][1000 genomes]
rs4693791	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56787802	0.81[ASN][1000 genomes]
rs57339266	0.81[ASN][1000 genomes]
rs59640859	0.82[ASN][1000 genomes]
rs6814223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845445	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs72866930	0.81[ASN][1000 genomes]
rs9307776	0.81[ASN][1000 genomes]
rs963857	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3412549	chr4:81834479-81951850	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81940000-81944200	Enhancers	Fetal Intestine Large	intestine
2	chr4:81940800-81944200	Enhancers	Fetal Intestine Small	intestine
3	chr4:81942600-81943800	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr4:81942800-81943600	Enhancers	Stomach Mucosa	stomach
5	chr4:81942800-81944000	Enhancers	Colon Smooth Muscle	Colon
6	chr4:81943000-81943600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr4:81943200-81943600	Enhancers	Duodenum Mucosa	Duodenum
8	chr4:81943200-81943600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
9	chr4:81943200-81943600	Flanking Active TSS	Stomach Smooth Muscle	stomach

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