Variant report

Variant	rs6828509
Chromosome Location	chr4:86614493-86614494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1116117	1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11732231	1.00[JPT][hapmap]
rs13105921	0.84[YRI][hapmap]
rs13113784	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482085	1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs2101134	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs28621471	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6848047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7655100	1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[ASN][1000 genomes]
rs900203	0.84[ASN][1000 genomes]
rs900205	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
2	chr4:86603800-86617800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:86603800-86617800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr4:86603800-86617800	Weak transcription	NHDF-Ad	bronchial
5	chr4:86604200-86624000	Weak transcription	HSMM	muscle
6	chr4:86604600-86617600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:86610200-86617400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:86610400-86614600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:86614000-86615000	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr4:86614400-86614800	Enhancers	Lung	lung
11	chr4:86614400-86614800	Enhancers	Right Ventricle	heart
12	chr4:86614400-86615000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:86614400-86618800	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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