Variant report

Variant	rs6828770
Chromosome Location	chr4:102242649-102242650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11943655	1.00[MEX][hapmap]
rs1441434	1.00[MEX][hapmap]
rs16996716	1.00[MEX][hapmap]
rs17030994	1.00[MEX][hapmap]
rs3730250	1.00[MEX][hapmap]
rs6820863	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9686022	1.00[MEX][hapmap]
rs9990724	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102228200-102249400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:102228200-102250400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:102228600-102247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:102237400-102243600	Weak transcription	Psoas Muscle	Psoas
5	chr4:102237400-102247200	Weak transcription	Primary T cells from cord blood	blood
6	chr4:102237600-102243400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr4:102238400-102244400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:102241400-102243600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:102241600-102243200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:102241600-102243600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:102241600-102243800	Enhancers	Ovary	ovary
12	chr4:102241800-102242800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:102241800-102243200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:102241800-102243200	Enhancers	NHEK	skin
15	chr4:102241800-102243400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:102241800-102243600	Enhancers	HMEC	breast
17	chr4:102241800-102243800	Enhancers	Colon Smooth Muscle	Colon
18	chr4:102242000-102242800	Weak transcription	Brain Angular Gyrus	brain
19	chr4:102242000-102243200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:102242000-102243600	Enhancers	Brain Anterior Caudate	brain
21	chr4:102242000-102246800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:102242000-102247000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:102242200-102243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:102242200-102243400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr4:102242200-102243600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:102242400-102242800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr4:102242600-102243000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr4:102242600-102243000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:102242600-102243000	Weak transcription	Adipose Nuclei	Adipose
30	chr4:102242600-102243200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr4:102242600-102243200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:102242600-102243200	Enhancers	Brain Hippocampus Middle	brain
33	chr4:102242600-102243400	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr4:102242600-102243400	Enhancers	Primary B cells from cord blood	blood
35	chr4:102242600-102243400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:102242600-102243400	Active TSS	Aorta	Aorta
37	chr4:102242600-102245600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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