Variant report

Variant	rs6828896
Chromosome Location	chr4:143773121-143773122
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143767768..143770227-chr4:143771801..143773532,2	MCF-7	breast:
2	chr4:143766308..143769108-chr4:143769485..143773998,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11736709	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11939835	0.85[ASN][1000 genomes]
rs1441411	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1441417	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1444949	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1992652	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28416530	0.85[ASN][1000 genomes]
rs4690729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690730	0.85[ASN][1000 genomes]
rs58445560	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60263370	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6537129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813785	0.85[ASN][1000 genomes]
rs6822703	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6823627	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6838663	0.93[ASN][1000 genomes]
rs6839158	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6846609	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72728694	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72728700	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72730409	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72730420	0.84[ASN][1000 genomes]
rs73850583	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7656375	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7663475	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7668263	0.85[ASN][1000 genomes]
rs7685997	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143768600-143781200	Weak transcription	Psoas Muscle	Psoas
2	chr4:143772200-143773800	Weak transcription	H9 Cell Line	embryonic stem cell

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