Variant report

Variant	rs6829466
Chromosome Location	chr4:87571182-87571183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1038291	0.86[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11097114	0.88[EUR][1000 genomes]
rs1187208	0.89[EUR][1000 genomes]
rs2086541	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35084226	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7660964	0.89[CHB][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv879522	chr4:87473776-87644842	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv822635	chr4:87479576-87622176	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv879523	chr4:87517609-87594472	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv879524	chr4:87517609-87603929	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv2755470	chr4:87536515-87613212	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87541200-87571200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:87544400-87571200	Weak transcription	Pancreas	Pancrea
3	chr4:87557600-87571200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:87566400-87571200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:87566400-87578400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:87566600-87571200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:87566600-87578600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:87567000-87571400	Weak transcription	NHDF-Ad	bronchial
9	chr4:87567800-87571200	Weak transcription	Esophagus	oesophagus
10	chr4:87568600-87571400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:87568800-87571800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:87568800-87573400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:87568800-87575200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:87569400-87571400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:87569400-87571800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:87569800-87571800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:87570000-87571200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:87570200-87571400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:87570400-87571600	ZNF genes & repeats	Fetal Lung	lung
20	chr4:87570600-87571200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr4:87570600-87571800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:87570600-87572800	ZNF genes & repeats	Brain Hippocampus Middle	brain
23	chr4:87570600-87573000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr4:87570800-87571600	ZNF genes & repeats	Fetal Stomach	stomach
25	chr4:87571000-87571800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:87571000-87571800	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--

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