Variant report

Variant	rs6830656
Chromosome Location	chr4:48070855-48070856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48069308..48072567-chr4:48073439..48077875,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1507923	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860943	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1979972	1.00[YRI][hapmap]
rs2251240	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs2352588	0.91[AFR][1000 genomes]
rs2352591	0.85[YRI][hapmap]
rs2464500	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs2581495	1.00[AMR][1000 genomes]
rs2661545	1.00[AMR][1000 genomes]
rs2704428	0.92[YRI][hapmap]
rs2704432	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs2882951	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs321629	1.00[AMR][1000 genomes]
rs321648	1.00[AMR][1000 genomes]
rs6825478	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832090	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844476	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48061200-48075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:48066800-48076400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:48067000-48082000	Strong transcription	Primary T cells from cord blood	blood
4	chr4:48067400-48078600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:48067600-48073200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:48067600-48080400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:48067600-48081200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:48067600-48102400	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:48067800-48075200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:48067800-48081600	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:48068000-48075400	Weak transcription	Thymus	Thymus
12	chr4:48068200-48075800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:48068600-48080000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:48068800-48074400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:48069400-48071600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:48069400-48073400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:48069600-48071200	Enhancers	Placenta	Placenta
18	chr4:48069600-48082600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr4:48069800-48073200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:48069800-48088000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:48070600-48071200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr4:48070800-48072200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:48070800-48105200	Weak transcription	GM12878-XiMat	blood

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