Variant report

Variant	rs6831204
Chromosome Location	chr4:143764513-143764514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143381634..143384495-chr4:143762183..143764564,2	MCF-7	breast:
2	chr4:143762270..143764702-chr4:143766052..143770313,5	MCF-7	breast:
3	chr4:143391120..143394953-chr4:143764140..143771077,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11100761	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939835	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13112916	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13122287	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13145724	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441411	0.83[ASN][1000 genomes]
rs1441417	0.84[ASN][1000 genomes]
rs1441418	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1444950	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1992652	0.86[ASN][1000 genomes]
rs2218240	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28416530	0.88[ASN][1000 genomes]
rs4575951	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690728	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690730	0.88[ASN][1000 genomes]
rs60263370	0.86[ASN][1000 genomes]
rs6537127	0.91[ASN][1000 genomes]
rs6537130	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6811022	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6813785	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6839158	0.83[ASN][1000 genomes]
rs6846609	0.82[ASN][1000 genomes]
rs72615963	0.84[ASN][1000 genomes]
rs72728700	0.86[ASN][1000 genomes]
rs72730409	0.84[ASN][1000 genomes]
rs73850583	0.84[ASN][1000 genomes]
rs7660533	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7668263	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7670139	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7685997	0.86[ASN][1000 genomes]
rs9994364	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3405448	chr4:143762902-143765225	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3420998	chr4:143763352-143764750	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143760400-143765800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:143761000-143765400	Enhancers	Dnd41	blood
4	chr4:143761600-143764800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143761800-143766200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:143763400-143764600	Weak transcription	Fetal Heart	heart
7	chr4:143763400-143765200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:143764400-143766800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links