Variant report

Variant	rs6833480
Chromosome Location	chr4:56775165-56775166
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56770927..56772433-chr4:56774182..56776594,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1072799	0.83[CEU][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs11727702	1.00[ASN][1000 genomes]
rs11729456	1.00[ASN][1000 genomes]
rs11734942	1.00[ASN][1000 genomes]
rs17086121	0.92[YRI][hapmap]
rs17086126	0.92[YRI][hapmap]
rs17086132	0.83[CEU][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs17086142	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs17086150	0.83[CEU][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs17086186	1.00[ASN][1000 genomes]
rs17086254	1.00[ASN][1000 genomes]
rs17728804	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs17740755	1.00[ASN][1000 genomes]
rs17742000	1.00[ASN][1000 genomes]
rs17742722	1.00[ASN][1000 genomes]
rs17743071	1.00[ASN][1000 genomes]
rs17797113	1.00[ASN][1000 genomes]
rs17797407	1.00[ASN][1000 genomes]
rs17797571	1.00[ASN][1000 genomes]
rs17797595	1.00[ASN][1000 genomes]
rs17798452	1.00[ASN][1000 genomes]
rs17798872	1.00[ASN][1000 genomes]
rs2899046	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899053	1.00[ASN][1000 genomes]
rs34179097	1.00[ASN][1000 genomes]
rs34184679	1.00[ASN][1000 genomes]
rs35143702	1.00[ASN][1000 genomes]
rs41279543	1.00[ASN][1000 genomes]
rs41280345	1.00[ASN][1000 genomes]
rs56026480	1.00[ASN][1000 genomes]
rs61753870	1.00[ASN][1000 genomes]
rs6814812	1.00[ASN][1000 genomes]
rs6817717	1.00[ASN][1000 genomes]
rs6845953	1.00[ASN][1000 genomes]
rs6848009	0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs73238359	1.00[ASN][1000 genomes]
rs73238365	1.00[ASN][1000 genomes]
rs73238367	1.00[ASN][1000 genomes]
rs73238368	1.00[ASN][1000 genomes]
rs73238369	1.00[ASN][1000 genomes]
rs73238370	1.00[ASN][1000 genomes]
rs73238371	1.00[ASN][1000 genomes]
rs73238372	1.00[ASN][1000 genomes]
rs73238373	1.00[ASN][1000 genomes]
rs73238377	1.00[ASN][1000 genomes]
rs73238379	1.00[ASN][1000 genomes]
rs73238380	1.00[ASN][1000 genomes]
rs73238381	1.00[ASN][1000 genomes]
rs73238382	1.00[ASN][1000 genomes]
rs73238383	1.00[ASN][1000 genomes]
rs73238384	1.00[ASN][1000 genomes]
rs73238387	1.00[ASN][1000 genomes]
rs73238390	1.00[ASN][1000 genomes]
rs73238395	1.00[ASN][1000 genomes]
rs73238397	1.00[ASN][1000 genomes]
rs73238398	1.00[ASN][1000 genomes]
rs73238399	1.00[ASN][1000 genomes]
rs73238400	1.00[ASN][1000 genomes]
rs748013	1.00[ASN][1000 genomes]
rs7657912	0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs7668978	0.92[YRI][hapmap]
rs7669903	1.00[ASN][1000 genomes]
rs7675287	1.00[ASN][1000 genomes]
rs7690739	0.83[CEU][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs7698100	1.00[ASN][1000 genomes]
rs9994601	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3406311	chr4:56580578-56840877	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv879024	chr4:56742205-56786589	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv879025	chr4:56742205-56808607	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3492848	chr4:56770810-56775264	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3492849	chr4:56770810-56775264	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56748600-56776800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:56751400-56776200	Weak transcription	A549	lung
3	chr4:56762200-56776600	Weak transcription	Osteobl	bone
4	chr4:56766800-56786800	Weak transcription	Ovary	ovary
5	chr4:56767400-56776200	Weak transcription	NHDF-Ad	bronchial
6	chr4:56770800-56777800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:56771000-56779800	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:56772000-56786600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:56772200-56776400	Weak transcription	HSMM	muscle
10	chr4:56772600-56784800	Weak transcription	Primary T cells from cord blood	blood
11	chr4:56772800-56776600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:56772800-56793200	Weak transcription	Left Ventricle	heart
13	chr4:56773000-56776600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:56773400-56775200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:56773600-56776400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:56773600-56776600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:56773600-56788200	Weak transcription	Right Atrium	heart
18	chr4:56773800-56776400	Weak transcription	HMEC	breast
19	chr4:56773800-56776400	Weak transcription	NHEK	skin
20	chr4:56773800-56778000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:56774000-56775800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:56774000-56778200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:56774000-56803200	Weak transcription	HUVEC	blood vessel
24	chr4:56774200-56775600	Weak transcription	Primary B cells from cord blood	blood
25	chr4:56774200-56786400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:56774400-56778200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:56774800-56776800	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links