Variant report
| Variant | rs6833840 |
|---|---|
| Chromosome Location | chr4:96580490-96580491 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:149223221..149225022-chr4:96577789..96580768,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000206737 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10012443 | 0.80[ASN][1000 genomes] |
| rs1025630 | 0.83[AMR][1000 genomes] |
| rs1118569 | 0.85[ASN][1000 genomes] |
| rs1118570 | 0.86[ASN][1000 genomes] |
| rs11934284 | 0.87[AMR][1000 genomes] |
| rs12502426 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12651480 | 0.80[AMR][1000 genomes] |
| rs13112111 | 0.85[ASN][1000 genomes] |
| rs13112339 | 0.83[ASN][1000 genomes] |
| rs13112562 | 0.83[ASN][1000 genomes] |
| rs13136133 | 0.85[ASN][1000 genomes] |
| rs13136911 | 0.85[ASN][1000 genomes] |
| rs1370003 | 0.81[ASN][1000 genomes] |
| rs1436579 | 0.85[ASN][1000 genomes] |
| rs1436583 | 0.82[AMR][1000 genomes] |
| rs1579627 | 0.84[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1595202 | 0.85[ASN][1000 genomes] |
| rs1865849 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1946738 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1946739 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2043656 | 0.81[AMR][1000 genomes] |
| rs4235420 | 0.81[AMR][1000 genomes] |
| rs6822198 | 0.85[ASN][1000 genomes] |
| rs7672473 | 0.84[ASN][1000 genomes] |
| rs7691500 | 0.83[ASN][1000 genomes] |
| rs7691945 | 0.83[ASN][1000 genomes] |
| rs7696585 | 0.83[ASN][1000 genomes] |
| rs7698569 | 0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs879311 | 0.83[AMR][1000 genomes] |
| rs9762308 | 0.85[ASN][1000 genomes] |
| rs9762310 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830012 | chr4:96547783-96746163 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1844506 | chr4:96554889-96704333 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1007133 | chr4:96556072-96614235 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv997304 | chr4:96575198-96861349 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
