Variant report

Variant	rs6834660
Chromosome Location	chr4:79703773-79703774
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79562740..79566241-chr4:79702324..79704926,3	MCF-7	breast:
2	chr4:79573461..79577118-chr4:79700688..79703892,3	K562	blood:
3	chr4:79547801..79550163-chr4:79699958..79704022,3	K562	blood:
4	chr4:79701732..79704307-chr4:79710996..79713060,2	MCF-7	breast:
5	chr4:79610837..79614309-chr4:79701098..79703975,3	K562	blood:
6	chr4:79703185..79706477-chr4:79708541..79712567,5	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17003448	1.00[AMR][1000 genomes]
rs5951	1.00[AMR][1000 genomes]
rs6828843	1.00[AMR][1000 genomes]
rs6846600	1.00[AMR][1000 genomes]
rs6850237	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6855799	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	esv1792429	chr4:79697116-79704210	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv1798320	chr4:79697116-79704210	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv1801852	chr4:79697116-79704210	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv1802642	chr4:79697116-79704210	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1802703	chr4:79697116-79704210	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1833723	chr4:79697116-79704210	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv1833992	chr4:79697116-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv1835474	chr4:79697116-79704210	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	esv1837381	chr4:79697116-79704210	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv1845915	chr4:79697116-79704210	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79698600-79708600	Weak transcription	Pancreas	Pancrea
2	chr4:79698800-79705200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:79699000-79717200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:79699200-79704200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:79699200-79704800	Weak transcription	Psoas Muscle	Psoas
6	chr4:79699200-79709000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:79699200-79709200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:79699400-79704200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:79699400-79722600	Weak transcription	Fetal Thymus	thymus
10	chr4:79699600-79705000	Weak transcription	NH-A	brain
11	chr4:79700000-79704600	Transcr. at gene 5' and 3'	K562	blood
12	chr4:79700000-79705200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:79700000-79705200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:79700000-79708600	Weak transcription	A549	lung
15	chr4:79700200-79714200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:79700400-79704600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:79700400-79704600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:79700400-79707800	Weak transcription	Brain Germinal Matrix	brain
20	chr4:79700400-79718200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:79700600-79704000	Enhancers	Primary B cells from peripheral blood	blood
22	chr4:79700600-79705000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:79700600-79705000	Weak transcription	HSMM	muscle
24	chr4:79700600-79705200	Weak transcription	Brain Substantia Nigra	brain
25	chr4:79700600-79705400	Weak transcription	HMEC	breast
26	chr4:79700600-79705600	Weak transcription	Adipose Nuclei	Adipose
27	chr4:79700600-79706600	Enhancers	Primary hematopoietic stem cells	blood
28	chr4:79700800-79705200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:79700800-79705200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr4:79700800-79705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:79700800-79705400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:79700800-79705600	Weak transcription	Fetal Kidney	kidney
33	chr4:79700800-79706200	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:79701000-79703800	Enhancers	NHDF-Ad	bronchial
35	chr4:79701200-79704200	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr4:79701200-79705200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:79701200-79708400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:79701200-79711600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:79701400-79705200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:79701400-79705200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr4:79701400-79705400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:79701400-79705400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr4:79701600-79704600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr4:79701600-79704600	Weak transcription	HSMMtube	muscle
45	chr4:79701600-79705400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr4:79701600-79705400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:79701600-79705400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:79701600-79706600	Enhancers	Fetal Intestine Large	intestine
49	chr4:79701600-79706800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr4:79701600-79719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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