Variant report

Variant	rs6837572
Chromosome Location	chr4:87813243-87813244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:87515391..87517685-chr4:87812251..87815383,4	MCF-7	breast:
2	chr4:87514124..87517809-chr4:87811943..87814768,5	MCF-7	breast:
3	chr12:6832818..6833441-chr4:87812969..87813889,2	HCT-116	colon:
4	chr4:87812859..87813560-chr4:177116539..177117352,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000163629	Chromatin interaction
ENSG00000111652	Chromatin interaction
ENSG00000150628	Chromatin interaction
ENSG00000109339	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11933110	1.00[AMR][1000 genomes]
rs11936392	0.95[AFR][1000 genomes]
rs11936622	1.00[AMR][1000 genomes]
rs11937511	1.00[AMR][1000 genomes]
rs11937815	1.00[AMR][1000 genomes]
rs11938746	1.00[AMR][1000 genomes]
rs11940149	1.00[AMR][1000 genomes]
rs11944714	1.00[AMR][1000 genomes]
rs61757791	1.00[AMR][1000 genomes]
rs6819730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6821849	1.00[AMR][1000 genomes]
rs6836459	0.91[AFR][1000 genomes]
rs7682510	0.91[AFR][1000 genomes]
rs7688768	0.91[AFR][1000 genomes]
rs7698902	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87812000-87813800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr4:87812000-87814400	Active TSS	Esophagus	oesophagus
3	chr4:87812200-87814000	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr4:87812400-87813400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:87812400-87813800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:87812400-87813800	Active TSS	Hela-S3	cervix
7	chr4:87812400-87814000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:87812600-87813600	Active TSS	Pancreas	Pancrea
9	chr4:87812600-87813600	Active TSS	GM12878-XiMat	blood
10	chr4:87812600-87813800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:87812600-87813800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:87812600-87813800	Active TSS	Rectal Smooth Muscle	rectum
13	chr4:87812600-87813800	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr4:87812600-87813800	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr4:87812600-87813800	Active TSS	Stomach Smooth Muscle	stomach
16	chr4:87812600-87813800	Active TSS	NHLF	lung
17	chr4:87812600-87814000	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr4:87812600-87814000	Active TSS	Brain Hippocampus Middle	brain
19	chr4:87812600-87814000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:87812600-87814000	Active TSS	Placenta Amnion	Placenta Amnion
21	chr4:87812600-87814200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr4:87812600-87814200	Active TSS	Brain Angular Gyrus	brain
23	chr4:87812600-87814200	Active TSS	Fetal Intestine Large	intestine
24	chr4:87812600-87814400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:87812600-87814400	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr4:87812800-87813400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:87812800-87813400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
28	chr4:87812800-87813400	Flanking Active TSS	Liver	Liver
29	chr4:87812800-87813400	Active TSS	Colonic Mucosa	Colon
30	chr4:87812800-87813800	Active TSS	H1 Cell Line	embryonic stem cell
31	chr4:87812800-87813800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:87812800-87813800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:87812800-87813800	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr4:87812800-87813800	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr4:87812800-87813800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:87812800-87813800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:87812800-87813800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:87812800-87813800	Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr4:87812800-87813800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr4:87812800-87813800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
41	chr4:87812800-87813800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr4:87812800-87813800	Active TSS	Brain Anterior Caudate	brain
43	chr4:87812800-87813800	Active TSS	Fetal Lung	lung
44	chr4:87812800-87813800	Active TSS	Fetal Thymus	thymus
45	chr4:87812800-87813800	Active TSS	HepG2	liver
46	chr4:87812800-87813800	Active TSS	HSMM	muscle
47	chr4:87812800-87813800	Active TSS	K562	blood
48	chr4:87812800-87814000	Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr4:87812800-87814000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
50	chr4:87812800-87814000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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