Variant report

Variant	rs6839853
Chromosome Location	chr4:143464697-143464698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1364916	1.00[AMR][1000 genomes]
rs1906874	1.00[AMR][1000 genomes]
rs2087445	1.00[AMR][1000 genomes]
rs2194871	1.00[AMR][1000 genomes]
rs4054899	1.00[AMR][1000 genomes]
rs57233248	1.00[AMR][1000 genomes]
rs59419951	1.00[AMR][1000 genomes]
rs60037426	1.00[AMR][1000 genomes]
rs60148840	1.00[AMR][1000 genomes]
rs60942288	1.00[AMR][1000 genomes]
rs61411607	1.00[AMR][1000 genomes]
rs7682953	1.00[AMR][1000 genomes]
rs975581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143444800-143468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143456800-143468400	Weak transcription	HMEC	breast
3	chr4:143457000-143466600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:143461400-143471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:143461800-143466200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143463000-143472200	Weak transcription	Aorta	Aorta
7	chr4:143463200-143465000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:143463200-143465000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:143463200-143465200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:143463200-143465400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:143463200-143470200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:143463400-143465400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:143463400-143468600	Weak transcription	Left Ventricle	heart
14	chr4:143464000-143466600	Enhancers	Fetal Intestine Small	intestine
15	chr4:143464400-143466000	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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