Variant report

Variant	rs6844759
Chromosome Location	chr4:143790529-143790530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10004713	0.93[EUR][1000 genomes]
rs10010316	0.83[EUR][1000 genomes]
rs10011348	0.81[EUR][1000 genomes]
rs10014390	0.94[EUR][1000 genomes]
rs10017013	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10017804	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10019031	0.95[EUR][1000 genomes]
rs10026166	0.80[EUR][1000 genomes]
rs10028292	0.93[EUR][1000 genomes]
rs10030770	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033548	0.94[EUR][1000 genomes]
rs10034074	0.83[EUR][1000 genomes]
rs10049511	0.83[EUR][1000 genomes]
rs10050319	0.83[EUR][1000 genomes]
rs10084818	0.93[EUR][1000 genomes]
rs1012011	0.88[EUR][1000 genomes]
rs1012012	0.88[EUR][1000 genomes]
rs10519675	0.80[EUR][1000 genomes]
rs11939835	0.80[ASN][1000 genomes]
rs13114894	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13115045	0.82[EUR][1000 genomes]
rs13116365	0.83[EUR][1000 genomes]
rs13122950	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs13124363	0.81[EUR][1000 genomes]
rs13126927	0.95[EUR][1000 genomes]
rs13141166	0.81[EUR][1000 genomes]
rs13141176	0.81[EUR][1000 genomes]
rs13145393	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13147030	0.95[EUR][1000 genomes]
rs13151684	0.93[EUR][1000 genomes]
rs13435685	0.88[EUR][1000 genomes]
rs1372237	0.93[EUR][1000 genomes]
rs1372238	0.93[EUR][1000 genomes]
rs1372239	0.93[EUR][1000 genomes]
rs1441414	0.93[EUR][1000 genomes]
rs1441421	0.81[EUR][1000 genomes]
rs1441423	0.81[EUR][1000 genomes]
rs1510139	0.93[EUR][1000 genomes]
rs1605954	0.95[EUR][1000 genomes]
rs1605955	0.95[EUR][1000 genomes]
rs17016873	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17017012	0.83[EUR][1000 genomes]
rs17678304	0.80[EUR][1000 genomes]
rs1876938	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1876939	0.93[EUR][1000 genomes]
rs1899319	0.93[EUR][1000 genomes]
rs2003851	0.93[EUR][1000 genomes]
rs2083619	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2120843	0.95[EUR][1000 genomes]
rs2120844	0.95[EUR][1000 genomes]
rs2166187	0.95[EUR][1000 genomes]
rs2322908	0.95[EUR][1000 genomes]
rs28390284	0.95[EUR][1000 genomes]
rs28404663	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28416530	0.80[ASN][1000 genomes]
rs28516045	0.81[EUR][1000 genomes]
rs28560068	0.93[EUR][1000 genomes]
rs28577925	0.80[EUR][1000 genomes]
rs28603287	0.81[EUR][1000 genomes]
rs28609754	0.81[EUR][1000 genomes]
rs28689569	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28693771	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2874907	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28749775	0.95[EUR][1000 genomes]
rs28789215	0.93[EUR][1000 genomes]
rs28814581	0.95[EUR][1000 genomes]
rs28814625	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28849788	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28850637	0.80[EUR][1000 genomes]
rs28854016	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34011238	0.81[EUR][1000 genomes]
rs34499804	0.88[EUR][1000 genomes]
rs34596213	0.81[EUR][1000 genomes]
rs34815588	0.81[EUR][1000 genomes]
rs34959108	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35582432	0.93[EUR][1000 genomes]
rs35668471	0.80[EUR][1000 genomes]
rs4414905	0.82[EUR][1000 genomes]
rs4690706	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4690708	0.95[EUR][1000 genomes]
rs4690709	0.95[EUR][1000 genomes]
rs4690730	0.80[ASN][1000 genomes]
rs4690733	0.95[EUR][1000 genomes]
rs4690734	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4690735	0.95[EUR][1000 genomes]
rs4690736	0.93[EUR][1000 genomes]
rs4690738	0.83[EUR][1000 genomes]
rs4690739	0.83[EUR][1000 genomes]
rs56027920	0.81[EUR][1000 genomes]
rs56283150	0.81[EUR][1000 genomes]
rs62330374	0.93[EUR][1000 genomes]
rs6537135	0.94[EUR][1000 genomes]
rs6537136	0.93[EUR][1000 genomes]
rs6813785	0.80[ASN][1000 genomes]
rs6818484	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824743	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6826496	0.93[EUR][1000 genomes]
rs6833501	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6833521	0.83[EUR][1000 genomes]
rs6834625	0.87[EUR][1000 genomes]
rs6834860	0.83[EUR][1000 genomes]
rs6840593	0.91[EUR][1000 genomes]
rs6847097	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6849626	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850278	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852412	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs716878	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs732600	0.93[EUR][1000 genomes]
rs732601	0.93[EUR][1000 genomes]
rs7655380	0.80[EUR][1000 genomes]
rs7660391	0.81[EUR][1000 genomes]
rs7660803	0.81[EUR][1000 genomes]
rs7668116	0.83[EUR][1000 genomes]
rs7668263	0.80[ASN][1000 genomes]
rs7670901	0.80[EUR][1000 genomes]
rs7681654	0.81[EUR][1000 genomes]
rs7683234	0.95[EUR][1000 genomes]
rs7683364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683834	0.95[EUR][1000 genomes]
rs7683962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688031	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7689077	0.83[EUR][1000 genomes]
rs7689462	0.83[EUR][1000 genomes]
rs7690592	0.81[EUR][1000 genomes]
rs7691325	0.81[EUR][1000 genomes]
rs7696326	0.80[EUR][1000 genomes]
rs7699632	0.93[EUR][1000 genomes]
rs877032	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9308153	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9308154	0.93[EUR][1000 genomes]
rs9308155	0.83[EUR][1000 genomes]
rs9308156	0.83[EUR][1000 genomes]
rs9308157	0.83[EUR][1000 genomes]
rs9683718	0.95[EUR][1000 genomes]
rs9884401	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033772	chr4:143788043-143800961	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1019095	chr4:143788043-143801270	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1021242	chr4:143788460-143801084	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv437434	chr4:143788564-143801347	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143788800-143791200	Weak transcription	Aorta	Aorta

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