Variant report

Variant	rs6846971
Chromosome Location	chr4:103359744-103359745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103359723..103361516-chr4:103422795..103425601,2	MCF-7	breast:
2	chr4:103265204..103266888-chr4:103358134..103360511,2	MCF-7	breast:
3	chr4:103351637..103354961-chr4:103357667..103360576,4	MCF-7	breast:
4	chr4:103358314..103362750-chr4:103421196..103424266,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction
ENSG00000109320	Chromatin interaction
ENSG00000248161	Chromatin interaction
ENSG00000260651	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11097783	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12510679	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12513242	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13115343	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs13116385	0.90[ASW][hapmap]
rs13119968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs13132193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13152048	1.00[CHD][hapmap]
rs17825737	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17825838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4699028	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6817730	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs926163	1.00[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6846971	NHEDC2	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103352400-103363000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:103352800-103360000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:103358600-103363800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:103358800-103360800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:103359000-103360800	Enhancers	K562	blood
6	chr4:103359000-103362000	Enhancers	HSMMtube	muscle
7	chr4:103359200-103361400	Enhancers	HSMM	muscle
8	chr4:103359400-103359800	Weak transcription	HepG2	liver
9	chr4:103359400-103360200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:103359400-103360200	Enhancers	NHDF-Ad	bronchial
11	chr4:103359400-103360600	Weak transcription	Placenta	Placenta
12	chr4:103359400-103361600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:103359600-103359800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr4:103359600-103359800	Flanking Active TSS	Hela-S3	cervix
15	chr4:103359600-103360200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:103359600-103360400	Enhancers	Primary hematopoietic stem cells	blood
17	chr4:103359600-103360600	Enhancers	Dnd41	blood
18	chr4:103359600-103360800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr4:103359600-103361000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr4:103359600-103361200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr4:103359600-103361400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:103359600-103361400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:103359600-103361400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:103359600-103361400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:103359600-103361400	Enhancers	Ovary	ovary
26	chr4:103359600-103361400	Enhancers	HMEC	breast
27	chr4:103359600-103361400	Enhancers	NHLF	lung
28	chr4:103359600-103361600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:103359600-103361600	Enhancers	NHEK	skin
30	chr4:103359600-103362000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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