Variant report

Variant	rs6850237
Chromosome Location	chr4:79726997-79726998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79695668..79697243-chr4:79725186..79727930,2	K562	blood:
2	chr4:79725596..79728159-chr4:79729927..79731920,2	K562	blood:

Variant related genes	Relation type
ENSG00000260278	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17003448	1.00[AMR][1000 genomes]
rs6828843	1.00[AMR][1000 genomes]
rs6834660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6846600	1.00[AMR][1000 genomes]
rs6855799	0.81[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:79702000-79731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:79705600-79731200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:79709200-79731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:79714400-79748400	Weak transcription	Aorta	Aorta
6	chr4:79715400-79730400	Weak transcription	Left Ventricle	heart
7	chr4:79719600-79727000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:79720600-79730000	Weak transcription	Primary T cells from cord blood	blood
9	chr4:79720800-79747800	Weak transcription	Osteobl	bone
10	chr4:79721200-79741400	Weak transcription	Thymus	Thymus
11	chr4:79721400-79730600	Weak transcription	Psoas Muscle	Psoas
12	chr4:79721600-79747200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:79721800-79727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:79721800-79727400	Weak transcription	NHEK	skin
15	chr4:79721800-79731400	Weak transcription	HMEC	breast
16	chr4:79722200-79731600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:79725800-79731400	Weak transcription	Fetal Heart	heart
18	chr4:79726000-79728600	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr4:79726200-79728400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:79726200-79728800	Weak transcription	Fetal Thymus	thymus
21	chr4:79726200-79728800	ZNF genes & repeats	K562	blood
22	chr4:79726600-79727400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:79726600-79728400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:79726600-79731000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:79726600-79747800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:79726800-79727000	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr4:79726800-79728400	ZNF genes & repeats	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links